Jatropha Genome Database
- JcCB0096461.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0096461.10 - phase: 2 /partial
(342 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29801.m003176 DNA binding protein, putative 315 3e-86
30170.m013868 DNA binding protein, putative 121 4e-28
29625.m000702 DNA binding protein, putative 61 8e-10
29908.m005963 DNA binding protein, putative 57 9e-09
30226.m002055 DNA binding protein, putative 57 1e-08
30089.m001012 DNA binding protein, putative 56 3e-08
30055.m001548 conserved hypothetical protein 55 6e-08
29863.m001047 transcription factor, putative 51 8e-07
29955.m001177 G-box-binding factor, putative 50 1e-06
>29801.m003176 DNA binding protein, putative
Length = 433
Score = 315 bits (806), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 192/337 (56%), Positives = 210/337 (62%), Gaps = 50/337 (14%)
Query: 18 KRQQTLGEMTLEEFLARAGVVREDTQLIGRSNNGGFFDEXXXXXXXXXXXXXXXXXFQQA 77
+RQQTLGEMTLEEFLA+AGVVREDTQLIGR NNGGFFDE FQQ
Sbjct: 135 QRQQTLGEMTLEEFLAKAGVVREDTQLIGRPNNGGFFDELSRLKNANNNNSGLPLEFQQP 194
Query: 78 NHNSGLMGTGIVE-NNNLVGSQPSNLALNVGGIRSSQPLVXXXXXXXXXXXXXXXXXXXX 136
N N+ LMG+ +VE NNNLV +QP L+ GGIRSSQPL
Sbjct: 195 NRNNALMGSQLVETNNNLVAAQP----LSAGGIRSSQPL--------------------- 229
Query: 137 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFPKPTNLAFAD-VRLANGAQLASPGIRSS 195
LFPK N+AFA V+L N AQLASPG R S
Sbjct: 230 ------------PQQHQMHLNQPQPQQQQALFPKSANVAFASPVQLVNNAQLASPGARGS 277
Query: 196 VAGIADTNIKNNLVHGGGMRMVGLGTAGVPVATGSPANHISPDMITKGNADTPSSLSPVP 255
GIAD ++ NNLVHGGG+ +VGLGT V VATGSPAN ISPDM+ K DTP LSPVP
Sbjct: 278 AVGIADPSLNNNLVHGGGIGIVGLGTRDVKVATGSPANQISPDMMAKSGTDTPL-LSPVP 336
Query: 256 NTFGRGRKASAALDKVIERRHRRMIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQELQ 315
N FGRGRKASAAL+KVIERRHRRMIKNRESAARSRARKQAYT MNQELQ
Sbjct: 337 NMFGRGRKASAALEKVIERRHRRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNQELQ 396
Query: 316 RKQ----------FLESMNRQWGSKRQCLRRTLTGPW 342
RKQ FLE++NRQWGSKR CL+RTLTGPW
Sbjct: 397 RKQAEFMEKQKNEFLETINRQWGSKRPCLQRTLTGPW 433
>30170.m013868 DNA binding protein, putative
Length = 422
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 84/130 (64%), Gaps = 15/130 (11%)
Query: 226 VATGSPANHISPDMITKGNADTPSSLSPVPNTFGRGRKASAA---LDKVIERRHRRMIKN 282
VATGSPAN +S D ITK N DT SS+SPVP F G + A ++KV+ERR RRMIKN
Sbjct: 295 VATGSPANQLSSDGITKSNGDT-SSVSPVPYVFNGGLRGRRAGGAVEKVVERRQRRMIKN 353
Query: 283 RESAARSRARKQAYTXXXXXXXXXXXXMNQELQRK----------QFLESMNRQWGSKRQ 332
RESAARSRARKQAYT NQEL++K Q +E MN+Q G KR+
Sbjct: 354 RESAARSRARKQAYTMELEAEVAKLKEENQELRKKQAEIMEMQKNQVMEMMNQQQG-KRR 412
Query: 333 CLRRTLTGPW 342
CLRRT TGPW
Sbjct: 413 CLRRTQTGPW 422
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 35/113 (30%)
Query: 18 KRQQTLGEMTLEEFLARAGVVREDTQLIGRSN-NGGFFDEXXXXXXXXXXXXXXXXXFQQ 76
+RQQTLGEMTLEEFL RAGVVRED QL + N NGGFF + F +
Sbjct: 132 QRQQTLGEMTLEEFLVRAGVVREDAQLAAKVNTNGGFFGD-----------------FSR 174
Query: 77 ANHNSGLMGTGIVENNNL----------------VGSQPSNLALNVGGIRSSQ 113
+ +N+ L G G +N L + Q SNL LNV G+RS+Q
Sbjct: 175 SGNNASL-GIGFQQNRVLGLNINNGNNNNSNTNQISLQSSNLPLNVNGVRSNQ 226
>29625.m000702 DNA binding protein, putative
Length = 403
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 32/39 (82%)
Query: 259 GRGRKASAALDKVIERRHRRMIKNRESAARSRARKQAYT 297
GR R ++KV+ERR RRMIKNRESAARSRARKQAYT
Sbjct: 333 GRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYT 371
>29908.m005963 DNA binding protein, putative
Length = 310
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 31/38 (81%)
Query: 260 RGRKASAALDKVIERRHRRMIKNRESAARSRARKQAYT 297
+ R + ++K IERR +RMIKNRESAARSRARKQAYT
Sbjct: 226 KRRYSDEVMEKTIERRQKRMIKNRESAARSRARKQAYT 263
>30226.m002055 DNA binding protein, putative
Length = 310
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 222 AGVPVATGSPANHIS-PD--MITKGNADTPSSLSPVPNTFGRGRKASAALDKVIERRHRR 278
AG + P N +S P M T + TP+ P ++K +ERR +R
Sbjct: 205 AGAVLDVSYPENQLSLPTSLMGTLSDVQTPARKRGTPEDM---------MEKTVERRQKR 255
Query: 279 MIKNRESAARSRARKQAYTXXXXXXXXXXXXMNQELQRKQFL 320
MIKNRESAARSRARKQAYT N+ L++++ +
Sbjct: 256 MIKNRESAARSRARKQAYTNELEHKVSRLEAENERLRKRKVI 297
>30089.m001012 DNA binding protein, putative
Length = 238
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 227 ATGSPANHISPDMITKGNADTPSSLSPVPNT--------FGRGRKASAALDKVIERRHRR 278
A+ SP ++ D +T + +LS P+T + R A ++K IERR RR
Sbjct: 137 ASLSPMELVTVDTVTPQSFPQKMALSSSPSTGTLSDTMASVQKRDAPDTVEKSIERRLRR 196
Query: 279 MIKNRESAARSRARKQAY 296
IKNRESAARSRARKQAY
Sbjct: 197 KIKNRESAARSRARKQAY 214
>30055.m001548 conserved hypothetical protein
Length = 358
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 26/27 (96%)
Query: 271 VIERRHRRMIKNRESAARSRARKQAYT 297
V+ERR RRMIKNRESAARSRARKQAYT
Sbjct: 273 VVERRQRRMIKNRESAARSRARKQAYT 299
>29863.m001047 transcription factor, putative
Length = 299
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 268 LDKVIERRHRRMIKNRESAARSRARKQAY 296
LDK ++R RRMIKNRESAARSR RKQAY
Sbjct: 238 LDKAAQQRQRRMIKNRESAARSRERKQAY 266
>29955.m001177 G-box-binding factor, putative
Length = 231
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 27/32 (84%)
Query: 266 AALDKVIERRHRRMIKNRESAARSRARKQAYT 297
A LDK +++ RRMIKNRESAARSR RKQAYT
Sbjct: 143 APLDKASQQKQRRMIKNRESAARSRERKQAYT 174