Jatropha Genome Database

JcCB0096311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0096311.10 + phase: 0 
         (301 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m001963 DNA binding protein, putative                           425   e-119
29822.m003351 DNA binding protein, putative                            68   6e-12
29631.m001003 DNA binding protein, putative                            65   3e-11
29851.m002516 Histone-lysine N-methyltransferase ATXR6, putative       53   2e-07
29840.m000626 chromodomain helicase DNA binding protein, putative      48   5e-06
30136.m001023 Histone-lysine N-methyltransferase ATXR6, putative       48   6e-06
30078.m002221 DNA binding protein, putative                            47   8e-06

>29648.m001963 DNA binding protein, putative
          Length = 510

 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/298 (69%), Positives = 232/298 (77%), Gaps = 11/298 (3%)

Query: 2   EQFRNPESYFHGKLEQF--------CTCRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVK 53
           EQF   ES+FHGK EQ         CTCR CGGKADGR+CLVCDSCEEMYHVSCI+P VK
Sbjct: 216 EQFHPQESHFHGKPEQIEACGAYSVCTCRRCGGKADGRNCLVCDSCEEMYHVSCIEPVVK 275

Query: 54  EIPLKSWYCASCTAVGMGSPHENCVVCKRLNAPRALCNDTDDEMKYATIERTFSKFEETS 113
           EIP KSWYCASC+A GMGSPHENC VC+RLNAPR LC    DE    TIE   S+FEE S
Sbjct: 276 EIPSKSWYCASCSAAGMGSPHENCAVCERLNAPRNLCTQASDEKGSPTIENG-SEFEEAS 334

Query: 114 NCSRDDFRQPPVGNKSSCVCKICGSEVENGEKVKICEHNGCPYKYYHVRCLTTNLLKSYG 173
           N   D F Q P G K+ C CK+CGSEVENGEKVKICEH  CPYKYYHVRCLT NLLKSYG
Sbjct: 335 NHIEDGFHQSPAGGKNVCFCKMCGSEVENGEKVKICEHILCPYKYYHVRCLTNNLLKSYG 394

Query: 174 PRWYCSSCLCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVKIKE 233
           PRWYC SCLCR C +DRDD QIVLCDGCDHA+H+YC++PPRTS+PRGKWFCRQCDVKIKE
Sbjct: 395 PRWYCPSCLCRTCFVDRDDDQIVLCDGCDHAYHMYCMSPPRTSIPRGKWFCRQCDVKIKE 454

Query: 234 IRRVKKAYEKQGNRMKRKDEMGRSACENLGKKLDVNCDQESDKDREPMEMLVKAALNF 291
           IRR K+AYEK+  R+++K E  + ACENL KKLD  C++ES   R  +++L+ AA N 
Sbjct: 455 IRRAKRAYEKREKRLEKKAEADKRACENLEKKLDEKCEKESGNGR--LDILLTAAFNL 510


>29822.m003351 DNA binding protein, putative
          Length = 2145

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 174  PRWYCSSCLCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVKIKE 233
            P+      +C+VC  D+DD  ++LCD CD  +H YCLNPP   +P G W+C  C V ++ 
Sbjct: 1214 PKAPWDEGVCKVCGFDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSC-VSVRM 1272

Query: 234  IRRVKKAYEKQGNRM--KRKDEMGRSACENL 262
            ++    + +  G     K + EM R   E L
Sbjct: 1273 VQEASVSTQVIGQNSCKKYQGEMTRIYLETL 1303



 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 20   TCRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASCTAVGM 70
             C+ CG   D    L+CD+C+  YH  C+ P +  IP  +WYC SC +V M
Sbjct: 1222 VCKVCGFDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVSVRM 1272


>29631.m001003 DNA binding protein, putative
          Length = 1794

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 182 LCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQC 227
           +C+VC +D+DD  ++LCD CD  +H YCLNPP   +P G W+C  C
Sbjct: 918 VCKVCGVDKDDDNVLLCDKCDSGYHTYCLNPPLARIPEGNWYCPSC 963



 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 20  TCRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASCTAVG 69
            C+ CG   D  + L+CD C+  YH  C+ P +  IP  +WYC SC   G
Sbjct: 918 VCKVCGVDKDDDNVLLCDKCDSGYHTYCLNPPLARIPEGNWYCPSCITQG 967


>29851.m002516 Histone-lysine N-methyltransferase ATXR6, putative
          Length = 344

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 17/122 (13%)

Query: 183 CRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDV------------K 230
           C+ C   +   +++LCD CD  +HL+CL P   SVP+G WFC  C +            K
Sbjct: 32  CQECGSGQSPAELLLCDKCDRGYHLFCLRPILVSVPKGSWFCPSCSLQKKPKSFPLVQTK 91

Query: 231 IKEIRRVKKAYEK-----QGNRMKRKDEMGRSACENLGKKLDVNCDQESDKDREPMEMLV 285
           I +  R++++ +      Q +  KRK        +   K L  N   + ++  E M  L 
Sbjct: 92  IIDFFRIQRSTQSTQNLGQESLKKRKRSSSLVLSKKRRKLLPFNPSDDPERRLEQMRSLA 151

Query: 286 KA 287
            A
Sbjct: 152 TA 153



 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 4  FRNPESYFHG--KLEQFCTCRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWY 61
          F +P  Y H     + +  C+ CG      + L+CD C+  YH+ C++P +  +P  SW+
Sbjct: 13 FLSPSPYAHNLEDDDDYVWCQECGSGQSPAELLLCDKCDRGYHLFCLRPILVSVPKGSWF 72

Query: 62 CASCT 66
          C SC+
Sbjct: 73 CPSCS 77


>29840.m000626 chromodomain helicase DNA binding protein, putative
          Length = 2257

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 30  GRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASC 65
           G + L CDSC  +YH+ C+ P +K IP+  W C  C
Sbjct: 84  GGNLLCCDSCPRVYHLQCLDPPLKRIPMGKWQCPKC 119



 Score = 47.8 bits (112), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 183 CRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQCDVKIKEIRRVKK 239
           C +C L  +   ++ CD C   +HL CL+PP   +P GKW C +C  K   ++ + +
Sbjct: 78  CVICDLGGN---LLCCDSCPRVYHLQCLDPPLKRIPMGKWQCPKCYQKSDPLKSITQ 131


>30136.m001023 Histone-lysine N-methyltransferase ATXR6, putative
          Length = 374

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 19  CTCRHCGGKADGRDCLVCDSCEEMYHVSCIQPAVKEIPLKSWYCASCTA 67
            +C  CG      + L+CD C++ +H+ C++P V  +P+ SW C  C+ 
Sbjct: 60  VSCMQCGSGERAEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSG 108


>30078.m002221 DNA binding protein, putative
          Length = 855

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 5/46 (10%)

Query: 182 LCRVCLLDRDDHQIVLCDGCDHAFHLYCLNPPRTSVPRGKWFCRQC 227
           LC VC    D   ++LCDGC  AFH  C +   +S+PRGKWFC+ C
Sbjct: 484 LCIVC---ADGGSLILCDGCPRAFHKGCAS--LSSIPRGKWFCQFC 524