Jatropha Genome Database

JcCB0095251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095251.10 - phase: 2 /partial
         (668 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008874 Eukaryotic translation initiation factor 3 subunit...   777   0.0  

>30128.m008874 Eukaryotic translation initiation factor 3 subunit,
           putative
          Length = 994

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/650 (66%), Positives = 467/650 (71%), Gaps = 18/650 (2%)

Query: 4   LKMKKSATCRMANLIGFNLDPKPESREALSRPSLLSELISKGVLSCATQEVKDLYHLLEN 63
           L+ +K    RMANLIGFNLDPKPESRE LSR +LL+EL+SKGVLSCATQEVKDLYH LE+
Sbjct: 344 LENEKERVLRMANLIGFNLDPKPESREVLSRSALLTELVSKGVLSCATQEVKDLYHFLEH 403

Query: 64  EFLPLDLAAKVQPLLSKISKLGGKIASASSVPEVQLSQYVPALEKLATLRLLQQVSQVYQ 123
           EFLPLDLAAK+QPLL+KIS+ GGK+ASASSVPE QLSQYVPALEKLATLRLLQQVSQVYQ
Sbjct: 404 EFLPLDLAAKIQPLLTKISRFGGKLASASSVPEAQLSQYVPALEKLATLRLLQQVSQVYQ 463

Query: 124 MMKIESLSQMIPFLDFSVVEKISVDAVKHNFLAMKVEHTKGVILFNNLGLESDGLRDHLA 183
            MKIESLSQMIPF DF VVEKISVDAVKH+F+AMK++H K VILF NL LESD LRDHLA
Sbjct: 464 TMKIESLSQMIPFFDFPVVEKISVDAVKHDFIAMKIDHVKNVILFGNLDLESDELRDHLA 523

Query: 184 IFAESLNKVRALIYPPAKKSSKLGEILPGLGEIVDKEHKRLLARKSIIXXXXXXXXXXXX 243
            FA SLNK R +IYPP KKSSK+G+ILPGLGEIVDKEHKRLLARKSII            
Sbjct: 524 NFAVSLNKARTMIYPPIKKSSKVGDILPGLGEIVDKEHKRLLARKSIIEKRKEEQERQLL 583

Query: 244 XXXXXXXXXXXXXXXKREEAEQKRLAAEIEQRKNXXXXXXXXXXXXXXXXXXXXDVDKRS 303
                          KREEAEQKRLAAEIEQRKN                    DVDKRS
Sbjct: 584 ELEREEESRRLQQQKKREEAEQKRLAAEIEQRKNQRILQEIEQRELEEAQALLEDVDKRS 643

Query: 304 KRKGGKKPILEGEKVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL 363
           KRKGGKKPILEGEKVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL
Sbjct: 644 KRKGGKKPILEGEKVTKQTIMERALSEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL 703

Query: 364 IEAAFQRRLVEEKALNEHEQQLEIELSRQRHDGDLREKNRLSRMLENKMIFQERVMSRRQ 423
           IEAAFQRRLVEEK L+E EQQLE ELSRQRHDGDLREKNRLSRML+NK+IFQERVMSRRQ
Sbjct: 704 IEAAFQRRLVEEKVLHESEQQLETELSRQRHDGDLREKNRLSRMLDNKIIFQERVMSRRQ 763

Query: 424 AEFDRLRTEREERINQIIQARKQEREANRKKIFYVRTXXXXXXXXXXXXXXXXXXXXXXX 483
           AEFDRLR EREERINQIIQARKQEREA RKKIFYVR+                       
Sbjct: 764 AEFDRLRVEREERINQIIQARKQEREAKRKKIFYVRSEEERLRKLHEEEEARKHEEAERR 823

Query: 484 XXXXXXXXXXXDEIAXXXXXXXXXXXXXXXXXXXXXXXGRSTDGPTRPSELAAGSRQEPG 543
                      DEIA                        R+ DG +RPSEL A SR EPG
Sbjct: 824 RKEEAERKAKLDEIAEKQRQREREIEEKVRKEADLR---RAIDGSSRPSELPAVSRPEPG 880

Query: 544 XXXXXXXXXXXXXXXXXXXXXXXXXGKYVPRFRRDRESTGQAPPDSEKWGGGSSRQAPSE 603
                                     KYVP+F R+R ++GQAPP++++W G S RQAPSE
Sbjct: 881 ASAAAAAAAAAPAPA-----------KYVPKFLRERGTSGQAPPETDRWTGVSGRQAPSE 929

Query: 604 PERW-SGGVRQ-PPSDSERWGSGSSRQAPPSDSDRWGSGPRPEDRNPPGD 651
           PERW SGG RQ   +D +RW    ++Q PPS SDRWGS  RP+DRNPPGD
Sbjct: 930 PERWNSGGSRQAAAADGDRWAGAGAKQ-PPS-SDRWGSSTRPDDRNPPGD 977