Jatropha Genome Database

JcCB0095101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0095101.10 + phase: 0 
         (102 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014228 axonemal dynein light chain, putative                    52   7e-08

>30147.m014228 axonemal dynein light chain, putative
          Length = 159

 Score = 51.6 bits (122), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%)

Query: 12 PTEELELAAIAISLNVRLRSSNMPLHKQERALRCARSFLDSAPNHRPNSSDLA 64
          P  + +LAAIA+ LN+RLRS+ MP   QERA RC R+ LD+    + N + +A
Sbjct: 36 PPNQAKLAAIAVDLNIRLRSAEMPGAMQERAFRCTRAVLDANLEKKLNPTHIA 88