Jatropha Genome Database

JcCB0094931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0094931.10 - phase: 0 
         (140 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001188 casein kinase II beta chain, putative                   171   1e-43
29822.m003509 casein kinase II beta chain, putative                   159   4e-40

>29709.m001188 casein kinase II beta chain, putative
          Length = 338

 Score =  171 bits (432), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 78/82 (95%), Positives = 80/82 (97%)

Query: 19  GDMFTEEQNELVESAAEMLYGLIHVRYILTTKGMAAMLEKYKNYDFGRCPRVYCCGQPCL 78
           GDMFTEEQNELVESAAEMLYGLIHVRYILT+KGM+AMLEKYKNYDFGRCPRVYCCGQPCL
Sbjct: 146 GDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMLEKYKNYDFGRCPRVYCCGQPCL 205

Query: 79  PVGQSDIPRSSTVKIYCPKYID 100
           PVGQSDIPRSSTVKIYCPK  D
Sbjct: 206 PVGQSDIPRSSTVKIYCPKCED 227


>29822.m003509 casein kinase II beta chain, putative
          Length = 259

 Score =  159 bits (402), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 84/99 (84%)

Query: 19  GDMFTEEQNELVESAAEMLYGLIHVRYILTTKGMAAMLEKYKNYDFGRCPRVYCCGQPCL 78
           GDMFTEEQ+ELVESAAEMLYGLIH RYILT+KGMAAML+KYKN DFGRCPRVYCCGQPCL
Sbjct: 156 GDMFTEEQHELVESAAEMLYGLIHARYILTSKGMAAMLDKYKNCDFGRCPRVYCCGQPCL 215

Query: 79  PVGQSDIPRSSTVKIYCPKYIDGAYFGTTFPHLFLMTYG 117
           PVGQSDIPRSSTVKI CP+  D  Y  + +    +++ G
Sbjct: 216 PVGQSDIPRSSTVKICCPRCEDIYYPRSKYQASMIISKG 254