Jatropha Genome Database

JcCB0094891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0094891.10 - phase: 0 /pseudo
         (152 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007258 conserved hypothetical protein                          131   1e-31

>30131.m007258 conserved hypothetical protein
          Length = 440

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 88/133 (66%), Gaps = 8/133 (6%)

Query: 1   MGSLSGIIQRPIXXXXXXXXXXXXTDLSEKLPSVKSVDTCSGSLQSHSPLSDPVQEPSFS 60
           MGS S   QRPI             D   KLPS KS D+CS S +  S LS+ VQE SFS
Sbjct: 1   MGSFSANFQRPIAAAAAVAVASLAPD---KLPSRKSNDSCSTSNRLDSSLSNSVQESSFS 57

Query: 61  WVSHISVSRLTKLSFVNRIHVPVPSTNFLVPNSIHKYVPSTLASPL-----LLHSYQSAE 115
           WVSHISVS+LT LSFV RI VPVP+TNFLV NSI K+ P+ L S +      L+SYQSAE
Sbjct: 58  WVSHISVSKLTNLSFVTRIRVPVPNTNFLVSNSIQKFPPNLLGSFIASSSPFLNSYQSAE 117

Query: 116 LAKGPKPTALTNK 128
           LAKGP+PTA TNK
Sbjct: 118 LAKGPQPTAFTNK 130