Jatropha Genome Database

JcCB0091031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0091031.10 + phase: 0 
         (215 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002363 Transcription factor RF2b, putative                     310   2e-85
29804.m001495 Transcription factor RF2b, putative                     238   2e-63
29577.m000449 Transcription factor RF2a, putative                     143   7e-35
30170.m014146 DNA binding protein, putative                           127   3e-30
30131.m007145 DNA binding protein, putative                            87   4e-18
29982.m000225 hypothetical protein                                     85   2e-17
36228.m000014 transcription factor, putative                           78   4e-15
29646.m001108 Transcription factor RF2a, putative                      77   6e-15
30005.m001260 hypothetical protein                                     68   3e-12
28617.m000204 Transcription factor RF2a, putative                      61   3e-10

>29729.m002363 Transcription factor RF2b, putative
          Length = 355

 Score =  310 bits (795), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/180 (85%), Positives = 164/180 (91%)

Query: 22  ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQ 81
           ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGL+TENTELKLRLQ
Sbjct: 162 ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLTTENTELKLRLQ 221

Query: 82  AMEQQAQLRDALNEALKKEVERLKLATGEMMTPTDTYNLGMHHMPYTQSSFFLPQSQTRI 141
           AMEQQA LRDALN+ALKKEVERLK ATGEMMTPTD+Y+LGM+HMPYTQSSFF PQSQ R 
Sbjct: 222 AMEQQAHLRDALNDALKKEVERLKFATGEMMTPTDSYHLGMNHMPYTQSSFFPPQSQPRP 281

Query: 142 VNSQNMQMPQFHSFQSNMSTPLQPMGGSSHSHAFPDMLQQDPLGRLQGLDISSRSTLVVK 201
           VN+QNMQMPQFH FQSNM T  Q +   SHSHAFP+ML  DPLGRLQGLDI SRST++VK
Sbjct: 282 VNTQNMQMPQFHPFQSNMLTSHQAIAAPSHSHAFPEMLPLDPLGRLQGLDIGSRSTVLVK 341


>29804.m001495 Transcription factor RF2b, putative
          Length = 386

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/180 (70%), Positives = 144/180 (80%), Gaps = 3/180 (1%)

Query: 22  ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQ 81
           ANRQSAARSKERKARYI ELERKVQTLQTEATTLSAQLTLFQRDTTGLSTEN ELKLRLQ
Sbjct: 195 ANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENIELKLRLQ 254

Query: 82  AMEQQAQLRDALNEALKKEVERLKLATGEMMTPTDTYNLGMHHMPYTQSSFFLPQSQTRI 141
           AMEQQAQLRDALNEALKKEVERLK+AT E+M+P++++NLGMH MPYT S+FF    Q+  
Sbjct: 255 AMEQQAQLRDALNEALKKEVERLKIATREIMSPSESFNLGMHQMPYTPSNFFSHPQQSGS 314

Query: 142 VNSQNMQMPQFHSFQSNMSTPLQPMGGSSHSHAFPDMLQQDPLGRLQGLDISSRSTLVVK 201
            N  NMQ P +    S  S P   +   ++SH F +++Q D LGRLQGLDISS+   +VK
Sbjct: 315 ANHPNMQFPPY--AHSQTSIPGHHL-HQTNSHTFSELMQNDSLGRLQGLDISSKGPNIVK 371


>29577.m000449 Transcription factor RF2a, putative
          Length = 425

 Score =  143 bits (360), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 84/101 (83%), Gaps = 3/101 (2%)

Query: 22  ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQ 81
           ANRQSAARSKERK RYI+ELERKVQTLQTEAT+LSAQLTL QRDT GL+ EN+ELKLRLQ
Sbjct: 230 ANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQ 289

Query: 82  AMEQQAQLRDALNEALKKEVERLKLATGEMMT---PTDTYN 119
            MEQQ  L+DALN+ALK+E++ LK+ TG+ M    P   YN
Sbjct: 290 TMEQQVHLQDALNDALKEEIQHLKVLTGQAMANGGPMMNYN 330


>30170.m014146 DNA binding protein, putative
          Length = 481

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 77/90 (85%)

Query: 22  ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQ 81
           ANR SAARSKERK RYI ELE+KVQTLQTEATTLS Q+T+ QRD+T L+++N ELK  LQ
Sbjct: 354 ANRLSAARSKERKTRYILELEQKVQTLQTEATTLSTQVTVLQRDSTALTSQNNELKFCLQ 413

Query: 82  AMEQQAQLRDALNEALKKEVERLKLATGEM 111
           AMEQQA+L+DALNEAL  EV+RL+LA  E+
Sbjct: 414 AMEQQAKLKDALNEALVAEVQRLRLAAAEL 443


>30131.m007145 DNA binding protein, putative
          Length = 574

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 58/90 (64%), Gaps = 23/90 (25%)

Query: 22  ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQ 81
           ANRQSAARSKERK RYISELE KVQTLQTEATTLSAQLTL Q  +  L+T          
Sbjct: 432 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQ--SPYLTT---------- 479

Query: 82  AMEQQAQLRDALNEALKKEVERLKLATGEM 111
                      LNEAL  EV RLKLAT E+
Sbjct: 480 -----------LNEALTAEVRRLKLATAEL 498


>29982.m000225 hypothetical protein
          Length = 106

 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 59  LTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKLATGEMMTPTDTY 118
           L L QRDTTGL+ EN ELKLRLQAMEQQA LRDALNEAL++EV+RLK+ATG++  P    
Sbjct: 4   LLLMQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI--PAVNG 61

Query: 119 NLGMHHMPYTQSS 131
           NL      +T  S
Sbjct: 62  NLFGRDSEWTAPS 74


>36228.m000014 transcription factor, putative
          Length = 283

 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 44/54 (81%)

Query: 22  ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTE 75
           ANRQSAARSKERK RY SELERKVQTLQTEATTLSAQ+T+ Q +   LST   E
Sbjct: 202 ANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQANCAFLSTLEAE 255


>29646.m001108 Transcription factor RF2a, putative
          Length = 325

 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 55/84 (65%)

Query: 22  ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQ 81
           ANRQSA RS+ RK +YISELER V +LQ E + LS ++         L+ +N+ LK R+ 
Sbjct: 205 ANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIA 264

Query: 82  AMEQQAQLRDALNEALKKEVERLK 105
           A+ Q    +DA  EALK+E+ERL+
Sbjct: 265 ALAQDKIFKDAHQEALKREIERLR 288


>30005.m001260 hypothetical protein
          Length = 533

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 22  ANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQ 81
           ANR SA ++KE+K  YI  LE K+Q+L +E   L A LTL Q ++ GL+ EN +LK +  
Sbjct: 284 ANRTSAVKAKEKKKLYICMLEDKIQSLNSERAALKAHLTLLQTESKGLNAENVKLKEQTD 343

Query: 82  AMEQQAQLRDALNEALKKEVERLKLAT-----GEMM 112
            +  Q   +++LNE ++ E+ +L+  T      EMM
Sbjct: 344 LVLHQLHFQESLNEEVRNEIMQLRTLTQMIPRNEMM 379


>28617.m000204 Transcription factor RF2a, putative
          Length = 380

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 4/103 (3%)

Query: 3   GCTGFGYVSCXXXXXXXXXANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 62
           GC     VS          A +Q A RS+ RK +YI+ELER VQ LQ E + +SA++   
Sbjct: 225 GCHAKSSVS----ETDTKRAKQQFAQRSRVRKLQYIAELERNVQALQAEGSEVSAEVEFL 280

Query: 63  QRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLK 105
            +    L+ EN  LK RL+++ Q+  ++   +E L++E+ RL+
Sbjct: 281 NQQNLILNMENKALKQRLESLAQEQLIKYLEHEVLEREIGRLR 323