Jatropha Genome Database

JcCB0089711.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0089711.20 - phase: 0 /TE
         (278 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011080 conserved hypothetical protein                           99   3e-21

>30190.m011080 conserved hypothetical protein
          Length = 101

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 59/92 (64%)

Query: 3  TNTIPFSSPPIFIGENYQLWTVKMKAYLQAYDLWEHVETEKEIPPLPSNPTMVQIKNHSE 62
           N +    PPI  G+NY  W VKM+ YLQA+DLW  VE + E  P   + T  +I++ + 
Sbjct: 6  ANGVVIIPPPILTGDNYSKWAVKMQCYLQAFDLWNFVEADTEPTPFTDDATHAKIRHFNA 65

Query: 63 EKAKKFKAKTCLHSSISDIIFTSIMTCEIAKE 94
          EKA+KFKAKTC+HS++SD+IF  I+ C   K 
Sbjct: 66 EKARKFKAKTCIHSAVSDVIFDKIICCNTPKR 97