Jatropha Genome Database

JcCB0089711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0089711.10 + phase: 0 
         (69 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014494 sec61 gamma subunit, putative                           107   2e-24
30190.m010919 sec61 gamma subunit, putative                           103   2e-23

>30147.m014494 sec61 gamma subunit, putative
          Length = 69

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 56/69 (81%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDALD+VFDPLR+FAKDSVRLVKRCHKPDRKEFTKVAFRTAI            KLIFIP
Sbjct: 1  MDALDNVFDPLRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGSS 69
          INNIIVGS 
Sbjct: 61 INNIIVGSG 69


>30190.m010919 sec61 gamma subunit, putative
          Length = 69

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 55/68 (80%)

Query: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKEFTKVAFRTAIXXXXXXXXXXXXKLIFIP 60
          MDA+DSV DPLR+F+KDSVRLVKRCHKPDRKEFTKVAFRTAI            KLIFIP
Sbjct: 1  MDAIDSVLDPLRDFSKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIP 60

Query: 61 INNIIVGS 68
          INNIIVGS
Sbjct: 61 INNIIVGS 68