Jatropha Genome Database

JcCB0088661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0088661.10 + phase: 0 /partial
         (771 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003591 conserved hypothetical protein                          919   0.0  

>29842.m003591 conserved hypothetical protein
          Length = 1399

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/794 (61%), Positives = 548/794 (69%), Gaps = 67/794 (8%)

Query: 1    IFVRQKNRCSSKAPENPIKAVRWMKTSPLNAEEIECIQEGLKVFKHDWMSVWRFIVPHRD 60
            IFVRQKNRCSSKAPENPIKAVR MKTSPL AEEIE IQEGL+V KHDWMSV RFIVPHRD
Sbjct: 629  IFVRQKNRCSSKAPENPIKAVRRMKTSPLTAEEIESIQEGLRVLKHDWMSVCRFIVPHRD 688

Query: 61   PSLLPRQWRMALGTQRSYKSDAAKKEKRRIYESNRRRSKTADLANSQQ-----DNQVDIT 115
            PSLLPRQWR+ALGTQRSYK DAAKKEKRRIYESNRRR KTADLAN QQ     DNQVD T
Sbjct: 689  PSLLPRQWRIALGTQRSYKLDAAKKEKRRIYESNRRRCKTADLANWQQVSDKEDNQVDST 748

Query: 116  GGENNSGDDCVDNVNEAYVHQAFLADWRPDA---------CFNLREKNLPSGAVLREGTR 166
            GGENNSGDD VDN NEAYVHQAFLADWRPDA         C NLR+KN  +GA+ REGTR
Sbjct: 749  GGENNSGDDYVDNPNEAYVHQAFLADWRPDASNLISSEHPCLNLRDKNFLTGALPREGTR 808

Query: 167  VREHSQIDNVHKFPNARYYQYPHAVSYFAHARHCPPNSMQLNHQLSNTTLNATKSQIYMW 226
            ++  S IDN+H FP ARY                   S+ LNHQ+S+T+  A KSQ Y+W
Sbjct: 809  IKNQSHIDNMHGFPYARY-------------------SVHLNHQVSDTSQGAAKSQFYLW 849

Query: 227  PYRTHRTDGAHLVKLAPDLPPVNLPPSVRVISQAAFKSNQCRLPMKIPTSGGSGVEAGRE 286
            PY T RTDGAHLVKLAPDLPPVNLPP+VRVISQ AFKSNQC +P+K+P  GG+  +A   
Sbjct: 850  PYWTRRTDGAHLVKLAPDLPPVNLPPTVRVISQTAFKSNQCAVPIKVPALGGTSGDA--R 907

Query: 287  RENIVPQLLQVVNSRATSLAKAKRDKTNQVTDNITNACSEELTATCAEESAVQNDVCVAE 346
            +ENIVPQ   V N R+TSLA  KRDK NQV D IT +C EE T++  EESA+ +D C AE
Sbjct: 908  KENIVPQPAVVANLRSTSLAMTKRDKRNQVGDKITTSCPEEFTSSHPEESAILHDTCAAE 967

Query: 347  ERGNDSDLQMHPLLFQAPEDGCLSYYPPSCSTATPSSFAFFAGNQPQLNLSLFHAPHQAN 406
            ERG +SDLQMHPLLFQ+PEDG LSYYP SCST   SSF FF+ NQPQLNLSLFH+   AN
Sbjct: 968  ERGTESDLQMHPLLFQSPEDGRLSYYPLSCSTGASSSFTFFSANQPQLNLSLFHSSRPAN 1027

Query: 407  QISDCLNKSSKTKESISASCGIDFHPLLQRTGEESSELATACSNTHQFVCLGGKSAQFQN 466
               DC NKSSKT ES SASCGIDFHPLLQR  EE+ + AT+CS  HQ+VCLGGKSAQ QN
Sbjct: 1028 HTVDCFNKSSKTGESTSASCGIDFHPLLQRAEEENIDFATSCSIAHQYVCLGGKSAQPQN 1087

Query: 467  PSDVVQTKLPVNS-PSATASKPSGPNEKSNELDLEIHLXXXXXXXXXXGTRDSASNYQPK 525
            P   VQTK PVNS PS T SKP    EK+NELDLEIHL          G+RD  ++ Q +
Sbjct: 1088 PLGAVQTKSPVNSGPSTTGSKPPSSIEKANELDLEIHLSSMSAVEKTRGSRDVGASNQLE 1147

Query: 526  LMISAPNPVNTIEKHKPNNPCHQHGENCSTVQSNLVSCGDALAVPSNSDRICNMDDVGDQ 585
               SAPN  NTI+K K                       DA+AV SN+D  C+M+D GDQ
Sbjct: 1148 PSTSAPNSGNTIDKDK---------------------SADAIAVQSNNDARCDMEDKGDQ 1186

Query: 586  SHPEIIMXXXXXXXXXXXXXXXXXXXXXXMADSDXXXXXXXXXXXXXPDKEITCSATEEV 645
            + PEI+M                      MADSD              DKE    A EEV
Sbjct: 1187 APPEIVMEQEELSDSDEETEEHVEFECEEMADSDGEEVLGCEPIAEVQDKEFPSIAMEEV 1246

Query: 646  TT---------EWKSTIHTDGNSSIPGKASPFLKLSLTSMRKESSSSAWLTLDSCAAVDP 696
            TT         EW S +H  GN+S P K S FLKL+L S+ +++++S+WLTLDSCA+VDP
Sbjct: 1247 TTDADYGNKQCEWSSPVHPTGNTSTPRKGSTFLKLNLKSLGRDATNSSWLTLDSCASVDP 1306

Query: 697  PRINAKYEECTIGACPVAKKLISGRPNRSCKKTTQSMRTVVTEKDVMDMAQQLSLGPLAV 756
            P   AK+EEC +G CPV K L SGR NRSCKK T S ++  TEKDV+DMAQQLSLG LAV
Sbjct: 1307 PSRKAKHEECILGVCPVVKNLASGRSNRSCKKLT-STKSGATEKDVVDMAQQLSLGLLAV 1365

Query: 757  STLKKPRKRACRTN 770
            STLKKPRKRA RTN
Sbjct: 1366 STLKKPRKRASRTN 1379