Jatropha Genome Database

JcCB0088201.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0088201.20 - phase: 2 /TE
         (787 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

48288.m000018 conserved hypothetical protein                           85   1e-16
47936.m000017 conserved hypothetical protein                           60   3e-09
35491.m000007 conserved hypothetical protein                           60   4e-09

>48288.m000018 conserved hypothetical protein
          Length = 220

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 103 NGVSLE-SLNHTFITLIPKIKDPVCNNDFRPISLCNAIFKIITKVIVNRSKIILPYIIHE 161
           NG S++  +N T   LIPK+  P  +N FRPI LCN  +K+ITKVI N  KII+  +I  
Sbjct: 79  NGGSIDLEINCTNTFLIPKMDAPESSNHFRPIILCNVTYKLITKVIANHLKIIMSKVISP 138

Query: 162 AXPAFVRGRLIIDNVLLDFKTFHFMKNKXFGRKCYFALNLDMSRAYDRVEWCFF 215
              + V+GR I++N+++  +  H + NK   +  Y  + +D+ +AYD++ W F 
Sbjct: 139 MQSSIVKGRHIMNNIIIVKEILH-LTNKMTSKTGYMVIKVDLEKAYDKLNWSFI 191


>47936.m000017 conserved hypothetical protein
          Length = 390

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 77  YAPLFFQKFWNIIGFSIEDKILSVLNNGVSLESLNHTFITLIPKIKDPVCNNDFRPISLC 136
           +  LF+QKFW+I+G +I  + L  LN+GV  E  N T ITL+PK++ P    +FRPI L 
Sbjct: 127 FHALFYQKFWSIVGENITRECLEFLNSGVRREERNKTLITLVPKVQQPQHVKEFRPIILV 186

Query: 137 N 137
           +
Sbjct: 187 H 187


>35491.m000007 conserved hypothetical protein
          Length = 63

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 42/63 (66%)

Query: 132 PISLCNAIFKIITKVIVNRSKIILPYIIHEAXPAFVRGRLIIDNVLLDFKTFHFMKNKXF 191
           PISLC   +KII K++V R + ++P++I E   AF+ GRLI D +L+  +  H++K++  
Sbjct: 1   PISLCTVYYKIIIKILVRRLQYVMPHLIKENQSAFITGRLIADKILVPHEVVHYIKSRKL 60

Query: 192 GRK 194
           G K
Sbjct: 61  GSK 63