Jatropha Genome Database

JcCB0087221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0087221.10 - phase: 0 
         (118 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006482 thump domain protein, putative                          125   4e-30

>30169.m006482 thump domain protein, putative
          Length = 382

 Score =  125 bits (314), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/69 (85%), Positives = 60/69 (86%), Gaps = 4/69 (5%)

Query: 1  MATVNNPKSAATANVNKGKKRKQRYLPHNKPVKKKGAYPLHPGVQGFFITCDGGRERQAS 60
          MAT N PKS AT      KKRKQRYLPHNKPVKKKG+YPLHPGVQGFFITCDGGRERQAS
Sbjct: 1  MATENKPKSVAT----NSKKRKQRYLPHNKPVKKKGSYPLHPGVQGFFITCDGGRERQAS 56

Query: 61 HEAINVIDS 69
          HEAINVIDS
Sbjct: 57 HEAINVIDS 65