Jatropha Genome Database

JcCB0086771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086771.10 - phase: 1 /pseudo/partial
         (415 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003633 homeobox protein, putative                              400   e-112
29600.m000538 homeobox protein, putative                              361   e-100
30174.m008969 homeobox protein, putative                              275   4e-74
30135.m000188 homeobox protein, putative                              239   2e-63
30147.m014288 homeobox protein, putative                              221   5e-58
30146.m003568 homeobox protein, putative                              209   3e-54
30171.m000424 Homeobox protein GLABRA2, putative                      195   3e-50
30068.m002643 homeobox protein, putative                              186   2e-47
28166.m001094 Homeobox protein FWA, putative                          150   1e-36

>29842.m003633 homeobox protein, putative
          Length = 727

 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/213 (91%), Positives = 205/213 (96%)

Query: 200 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHR 259
           TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVL AATSFW+PVPPK+VF+FLSDENHR
Sbjct: 513 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLCAATSFWLPVPPKRVFQFLSDENHR 572

Query: 260 SEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIY 319
           SEWDILSNGGQV+EMAHIANGRDPGN VSLLRV SANSSQSNML LQESCTDSTGSYVIY
Sbjct: 573 SEWDILSNGGQVEEMAHIANGRDPGNCVSLLRVISANSSQSNMLTLQESCTDSTGSYVIY 632

Query: 320 APVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPGGSLDVGSGGALLTVAFQILVD 379
           APVDIAAMNIVLSGGDPDYVALLPSGFAILPDGP ++PG  LDVGSGGAL+TVAFQILVD
Sbjct: 633 APVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPGFSPGIILDVGSGGALVTVAFQILVD 692

Query: 380 SVPTAKLSLGSVATVNNLIKCTVERIKAAVSSD 412
           S+PTAKLSLGSVATVNNLIKCTVERIKAAV+ +
Sbjct: 693 SIPTAKLSLGSVATVNNLIKCTVERIKAAVTCE 725


>29600.m000538 homeobox protein, putative
          Length = 731

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/216 (82%), Positives = 194/216 (89%), Gaps = 2/216 (0%)

Query: 200 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHR 259
           TAH WTTLS TG+DDVRVMTRKS+DDPGRPPGIVLSAATSFW+PVPPK+VF+FL DEN R
Sbjct: 515 TAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSR 574

Query: 260 SEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIY 319
           ++WDILSNGG VQEMAHIANGRD GN VSLLRVNSANSSQSNMLILQESCTD T S+VIY
Sbjct: 575 NQWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIY 634

Query: 320 APVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPG--GSLDVGSGGALLTVAFQIL 377
           APVDI AMN+VL+GGDPDYVALLPSGFAILPDG   + G  G   V +GG+LLTVAFQIL
Sbjct: 635 APVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGGESVSAGGSLLTVAFQIL 694

Query: 378 VDSVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDN 413
           VDSVPTAKLSLGSVATVNNLI CTVERIKAA+S +N
Sbjct: 695 VDSVPTAKLSLGSVATVNNLIACTVERIKAALSCEN 730


>30174.m008969 homeobox protein, putative
          Length = 825

 Score =  275 bits (702), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 140/225 (62%), Positives = 173/225 (76%), Gaps = 11/225 (4%)

Query: 200 TAHAWTTLSATGSD-DVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENH 258
           T H W  L+A   D DVRVMTRKS+DDPG PPGIVLSAATS W+PV P+++F+FL DE  
Sbjct: 601 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERL 660

Query: 259 RSEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVI 318
           RSEWDILSNGG +QEMAHIA G+D GN VSLLR ++ N++QS+MLILQE+C D+ GS V+
Sbjct: 661 RSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVV 720

Query: 319 YAPVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPGGSLDVGS----------GGA 368
           YAPVDI AM++V++GGD  YVALLPSGFAI+PDGP      +   G            G+
Sbjct: 721 YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGSPTNQNGGGNNGGGPNRVSGS 780

Query: 369 LLTVAFQILVDSVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDN 413
           LLTVAFQILV+S+PTAKL++ SV TVNNLI CTV++IKAA+  ++
Sbjct: 781 LLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 825


>30135.m000188 homeobox protein, putative
          Length = 713

 Score =  239 bits (609), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/232 (54%), Positives = 167/232 (71%), Gaps = 14/232 (6%)

Query: 192 TFQQEISVT-AHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVF 250
           +F   IS + +H WT +S  GS++V V   KS D PG+P G+VL+AAT+FW+PV P+ VF
Sbjct: 487 SFCSSISTSNSHRWTAIS--GSNEVGVRVHKSTD-PGQPNGVVLNAATTFWLPVSPQNVF 543

Query: 251 EFLSDENHRSEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCT 310
            F  DE  R++WD+LS+G  VQE+AHIANG  PGN +S+LR  + NS Q+NMLILQESC 
Sbjct: 544 NFFKDERTRAQWDVLSSGNAVQEVAHIANGSHPGNCISVLR--AFNSGQNNMLILQESCI 601

Query: 311 DSTGSYVIYAPVDIAAMNIVLSGGDPDYVALLPSGFAILPDG-PEYNPGGSLD------- 362
           DS+GS V+Y PVD+ A+NI +SG DP Y+ LLPSGF I PDG P++  G S         
Sbjct: 602 DSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTICPDGRPDHGDGASTSSNAHGSM 661

Query: 363 VGSGGALLTVAFQILVDSVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDNN 414
             S G+L+TV+FQILV S+P+AKL++ SV TVNNLI  TV++IKAA++  N+
Sbjct: 662 CRSSGSLITVSFQILVSSLPSAKLNMESVTTVNNLINTTVQQIKAAMNCPNS 713


>30147.m014288 homeobox protein, putative
          Length = 799

 Score =  221 bits (563), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 116/210 (55%), Positives = 151/210 (71%), Gaps = 13/210 (6%)

Query: 213 DDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHRSEWDILSNGGQVQ 272
           +DVR++TRK+++DPG PPGIVLSAATS W+PV  +++F+FL DE  R EWDILS+GG +Q
Sbjct: 587 EDVRILTRKNINDPGEPPGIVLSAATSVWLPVMRQRLFDFLRDERSRCEWDILSHGGMLQ 646

Query: 273 EMAHIANGRDPGNYVSLLRVN--SANSSQSNMLILQESCTDSTGSYVIYAPVDIAAMNIV 330
           EM HI+      N VSLLR    S N++ S+MLILQE+  D   S V+YAPVDI +M++V
Sbjct: 647 EMVHISKSHSRANCVSLLRSTAVSPNANDSSMLILQETWHDVASSLVVYAPVDIPSMSVV 706

Query: 331 LSGGDPDYVALLPSGFAILPDGPEYNPGGSLDVGS-----------GGALLTVAFQILVD 379
           ++GGD  YVALLPSGF ILPD      G +   G+           GG +LTV FQILV+
Sbjct: 707 MNGGDSTYVALLPSGFVILPDDSSSQGGSNFCNGTLVKRDSDGGDGGGCILTVGFQILVN 766

Query: 380 SVPTAKLSLGSVATVNNLIKCTVERIKAAV 409
           ++PTAKL++ SV TVNNLI CT++RIKAA+
Sbjct: 767 NLPTAKLTVESVETVNNLISCTIQRIKAAL 796


>30146.m003568 homeobox protein, putative
          Length = 758

 Score =  209 bits (531), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/217 (45%), Positives = 147/217 (67%), Gaps = 8/217 (3%)

Query: 202 HAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHRSE 261
           H W  +++   +D+R+ +RK+++DP  P G++L A +S W+PV P  +F++L D+ HR+E
Sbjct: 544 HTWNRVTSKTGEDIRISSRKNLNDPAEPLGVILCAVSSVWLPVSPHVLFDYLRDDTHRNE 603

Query: 262 WDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAP 321
           WDI+SNGGQVQ +A++A G+D GN V+   + +  S+++NM +LQ+ CT++  S V+YAP
Sbjct: 604 WDIMSNGGQVQSIANLAKGQDRGNAVT---IQTMKSNENNMWVLQDCCTNAYESIVVYAP 660

Query: 322 VDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNP-----GGSLDVGSGGALLTVAFQI 376
           VDI  M  V++G D    A+LPSGFAILPDG E                GG+LLTVAFQI
Sbjct: 661 VDINGMQSVITGCDSSSTAILPSGFAILPDGLETRALVITSRREEKRTEGGSLLTVAFQI 720

Query: 377 LVDSVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDN 413
           L ++ PTAKL++ SV +VN LI CT+  IK ++  ++
Sbjct: 721 LTNTSPTAKLTMESVESVNTLISCTLRNIKTSLQCED 757


>30171.m000424 Homeobox protein GLABRA2, putative
          Length = 546

 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/218 (50%), Positives = 146/218 (66%), Gaps = 14/218 (6%)

Query: 207 LSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHRSEWDILS 266
           LS   +  VRV  RKS + PG+P G+++SAATS W+P+PP+ VF F  DE  R +WDILS
Sbjct: 330 LSEVNNSGVRVSVRKSTE-PGQPGGLIVSAATSLWLPLPPQNVFSFFKDEKTRVQWDILS 388

Query: 267 NGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDIAA 326
           NG  V E+AHI+NG  PGN ++++R      S++NML+LQESCTD +GS V+YAPVDI +
Sbjct: 389 NGKPVHEIAHISNGTHPGNCIAIIR--PFVPSENNMLMLQESCTDPSGSLVVYAPVDIPS 446

Query: 327 MNIVLSGGDPDYVALLPSGFAILPDG-PEYNPGGSLDVG---SGGALLTVAFQILV---- 378
           MNI +SG D   + +LPSGF I  DG P+     S       +GG+LLTVAFQILV    
Sbjct: 447 MNIAISGEDSSIIPILPSGFVISGDGRPDAGNVASTSANAGRTGGSLLTVAFQILVSTPT 506

Query: 379 ---DSVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDN 413
               S  T ++++ SVATVN LI  TV++IKAA++  N
Sbjct: 507 STSSSFSTKEMNMESVATVNTLISSTVQKIKAALNCSN 544


>30068.m002643 homeobox protein, putative
          Length = 810

 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 147/234 (62%), Gaps = 21/234 (8%)

Query: 192 TFQQEISV-TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVF 250
           TF   IS  +  +WT LS +  D VR+ TRK + +PG+P G++LSA ++ W+P P  +VF
Sbjct: 545 TFCMNISTCSGQSWTALSDSSDDTVRITTRK-ITEPGQPNGVILSAVSTTWLPYPHYQVF 603

Query: 251 EFLSDENHRSEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVN-SANSSQSNMLILQESC 309
           + L DE  RS+ D+LSNG  + E+AHIANG  PGN +SLLR+N ++NSSQ   L+LQESC
Sbjct: 604 DILRDERRRSQLDVLSNGNALHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESC 663

Query: 310 TDSTGSYVIYAPVDIAAMNIVLSGGDPDYVALLPSGFAILP--------DGPEYNPGGSL 361
           TD +GS ++Y  V++ ++ + +SG DP  + LLP GF I+P             N G S+
Sbjct: 664 TDQSGSLIVYTTVNVDSIQLAMSGEDPSCIPLLPLGFVIVPVESITSTSKDTGGNEGNSI 723

Query: 362 -------DVGSG---GALLTVAFQILVDSVPTAKLSLGSVATVNNLIKCTVERI 405
                  + G G   G LLT+  Q+L  ++P+AKL+L +V  +NN ++ TV +I
Sbjct: 724 KSSEENGNTGHGCTSGCLLTIGLQVLASTIPSAKLNLSTVNAINNHLRSTVHQI 777


>28166.m001094 Homeobox protein FWA, putative
          Length = 581

 Score =  150 bits (379), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 122/214 (57%), Gaps = 4/214 (1%)

Query: 200 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHR 259
           T + W     TG++D R+MT+   D+ G      ++   S W+P PP +VF+FL  E+ R
Sbjct: 371 TNNLWMPFPVTGAEDFRMMTKSIGDNSGWSI-TTIAFTYSLWLPAPPSRVFDFLRHEDCR 429

Query: 260 SEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIY 319
           ++WD+LS+  +VQE+ HI  G +  N +S+LR  S  S    +L LQES TD   SYV+Y
Sbjct: 430 NKWDLLSHELEVQELTHIIKGENQENRISVLRTMSGYSDCKEILYLQESYTDPFASYVVY 489

Query: 320 APVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPGGSLDVGSGGALLTVAFQILVD 379
           AP D  +M  +L GG+ D + +LPSGF I PD    N GG       G +LT+AF I+  
Sbjct: 490 APFDFDSMATILKGGNSDDMNILPSGFVIHPDKQASNYGGH---EGDGCVLTLAFHIIDG 546

Query: 380 SVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDN 413
           S     +S  SV T+ N++  T   IKAAV  D+
Sbjct: 547 SSIKDIISPQSVDTIYNILVRTACLIKAAVLYDD 580