Jatropha Genome Database

JcCB0086551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086551.10 - phase: 0 /partial
         (349 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004621 conserved hypothetical protein                          407   e-114
29927.m000613 conserved hypothetical protein                          266   1e-71

>29848.m004621 conserved hypothetical protein
          Length = 391

 Score =  407 bits (1047), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/350 (61%), Positives = 237/350 (67%), Gaps = 21/350 (6%)

Query: 1   MPRPGPRPYECVRRAWHSDRHQPIRGSLIQEIFRVVNEVHSSATKKNKEWQEKLPVVVLR 60
           MPRPGPRPYECVRRAWHSDRHQP+RGSLIQEIFRVVNEVHS ATKKNKEWQEKLPVVVL+
Sbjct: 1   MPRPGPRPYECVRRAWHSDRHQPVRGSLIQEIFRVVNEVHSPATKKNKEWQEKLPVVVLK 60

Query: 61  AEEIMYSKANSEAEYMDLKTLWDRTNDAINTIIRRDESTETGELLQPCIEAALNLGCTPR 120
           AEEIMYSKANSEAEYMDLKTLW+R ND INTI+RRDESTETG+LL PCIEAALNLGCTPR
Sbjct: 61  AEEIMYSKANSEAEYMDLKTLWERVNDVINTIVRRDESTETGDLLLPCIEAALNLGCTPR 120

Query: 121 RASRSQRNCNPRCYLXXXXXXXXXXXXGIVNDTIRANHTASPQCIPNYSNFIKSTIMNST 180
           R SRSQRNCNPRCYL             +        HT S QCIPNY + IK  I+NST
Sbjct: 121 RTSRSQRNCNPRCYLTPGTQEPNTLPPAM------PTHTTSLQCIPNYLDLIKPAIVNST 174

Query: 181 QLGSELQNLICQNISIASNKFLFRTDNSRLSNYNQYFPMENRXXXXXXXXXXXXXGNCLD 240
            LGSELQNL+CQNIS+ SNKFL  TDN  LSNYNQ FPMEN                   
Sbjct: 175 HLGSELQNLVCQNISVTSNKFLLATDNGCLSNYNQSFPMENYPMSSLYSV---------- 224

Query: 241 HQNGLGILPKTLPSILEPVKVGIEQNLLSCNEDAIAKIDQKDPIDKPIEQLEIGCDXXXX 300
           +    G++P  + S LEP KVG+EQNL S  +DA  K +Q DP   P+ Q E GCD    
Sbjct: 225 YPLCYGLIP--VSSTLEPGKVGVEQNLFSFGDDAAVKFNQPDP-QSPLNQHETGCDLSLR 281

Query: 301 XXXXXXXXXXM-QNRHLQDVEDVGFGHSREGIK-SNKMPQMDKELSLFNR 348
                       +NR LQD ED G G  +EGIK   +M   D EL    R
Sbjct: 282 LGSLSAAPLPSDKNRQLQDFEDNGHGSFQEGIKFKTQMQHTDDELHFVTR 331


>29927.m000613 conserved hypothetical protein
          Length = 373

 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 168/369 (45%), Positives = 208/369 (56%), Gaps = 34/369 (9%)

Query: 1   MPRPGPRPYECVRRAWHSDRHQPIRGSLIQEIFRVVNEVHSSATKKNKEWQEKLPVVVLR 60
           MPRPGPRPYECVRRAWHSDRHQP+RGS+I +IFRVV+E HS+ TKKNKEWQEKLP+VVL+
Sbjct: 1   MPRPGPRPYECVRRAWHSDRHQPMRGSVIHQIFRVVSETHSAITKKNKEWQEKLPIVVLK 60

Query: 61  AEEIMYSKANSEAEYMDLKTLWDRTNDAINTIIRRDESTETGELLQPCIEAALNLGCTPR 120
           AEEIMYSKANSEAEYM+  TLWDR NDAINTIIRRDES ETGELL PCIEAALNLGC P 
Sbjct: 61  AEEIMYSKANSEAEYMNPDTLWDRVNDAINTIIRRDESNETGELLPPCIEAALNLGCIPV 120

Query: 121 RASRSQRNCNPRCYLXXXXXXXXXXXXGIVNDTIRANHTASPQCIPNYS----NFIK-ST 175
           RASRSQR+ NPR YL             IV    RAN    PQ  P  S    NF + +T
Sbjct: 121 RASRSQRHSNPRSYLSPRMHEPVPAALRIVE---RANDKQCPQLSPPQSSSQLNFARPTT 177

Query: 176 IMNSTQLGSELQ---------------NLICQNISIASNKFLFRTDNSRLSNYNQYFPM- 219
            +NST   SE                  L+  NIS+ S++ + +  N +L N    +P+ 
Sbjct: 178 AVNSTLPVSESNCHLTESSNIDASCSYPLLYDNISLGSSQLMSKEINKQL-NLGSVYPLY 236

Query: 220 --ENRXXXXXXXXXXXXXGNCLDHQNGLGILPKTLPSILEPVKVGIEQNLLSCNEDAIA- 276
              N               N     N + +      S  EP ++ +  + L+C    I+ 
Sbjct: 237 YGNNYHIKQPHLASQVPEKN----SNTIFVGTPISTSAAEPAEMSVFHDFLTCPSAEISA 292

Query: 277 -KIDQKDPIDKPIEQLEIGCDXXXXXXXXXXXXXXMQNRHLQDVEDVGFGHSREGIK-SN 334
            +I Q D  +   +   + CD              M+   +Q+ EDVG  +S++  K SN
Sbjct: 293 KRISQADLGNTHEKPSGVQCDLSLRLGLFTDLSVNMKRSLVQETEDVGSSNSQDRSKSSN 352

Query: 335 KMPQMDKEL 343
              Q +KEL
Sbjct: 353 FYLQKNKEL 361