Jatropha Genome Database

JcCB0085591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085591.10 - phase: 0 /partial
         (183 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29776.m000469 Charged multivesicular body protein 2b-B, putative      243   3e-65
28492.m000477 Charged multivesicular body protein 2a, putative        215   8e-57
29912.m005282 Charged multivesicular body protein 2a, putative        100   4e-22
29706.m001300 Charged multivesicular body protein 2a, putative        100   7e-22

>29776.m000469 Charged multivesicular body protein 2b-B, putative
          Length = 405

 Score =  243 bits (621), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 126/154 (81%), Positives = 131/154 (85%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI
Sbjct: 39  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 98

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
           STGMKGATKAMVAMNKQMAPTKQ KVIKEFQKQSAQ+DMTIEMMSE+I            
Sbjct: 99  STGMKGATKAMVAMNKQMAPTKQVKVIKEFQKQSAQLDMTIEMMSEAIDETLDKDEAEEE 158

Query: 149 XXXXXNQVLDEIGVGIASQLSSAPKGQLQRRMLP 182
                NQVLDEIGV IASQLSSAPKG++  +  P
Sbjct: 159 TEELTNQVLDEIGVDIASQLSSAPKGRIASKNAP 192


>28492.m000477 Charged multivesicular body protein 2a, putative
          Length = 212

 Score =  215 bits (548), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 107/148 (72%), Positives = 124/148 (83%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EKKLVAEIK+TAKTGNEAATK+LARQLVRLRQQI NLQGSRAQIRG+ATHTQA++A +S+
Sbjct: 39  EKKLVAEIKRTAKTGNEAATKVLARQLVRLRQQIANLQGSRAQIRGIATHTQAMHAQSSV 98

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
           + G+KGATKAM +MNKQMAP KQA+VI+EFQKQSAQMDMT EMMSE+I            
Sbjct: 99  AVGLKGATKAMASMNKQMAPAKQAQVIREFQKQSAQMDMTTEMMSEAIDDALDDDEAEEE 158

Query: 149 XXXXXNQVLDEIGVGIASQLSSAPKGQL 176
                +QVLDEIGV IASQLS+APKG++
Sbjct: 159 TDELTDQVLDEIGVDIASQLSTAPKGKI 186


>29912.m005282 Charged multivesicular body protein 2a, putative
          Length = 223

 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 84/140 (60%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EKKL+AEIK++AK G   A K++A+ L+R R QI      ++Q++GV+   Q L ++ ++
Sbjct: 40  EKKLIAEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAM 99

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
              MKG TKAM  MN+QM      K+++EF++Q+ +M+M  E+M ++I            
Sbjct: 100 GEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALEGDEEEEE 159

Query: 149 XXXXXNQVLDEIGVGIASQL 168
                +QVLDEIG+ I  +L
Sbjct: 160 TEELVSQVLDEIGIDINQEL 179


>29706.m001300 Charged multivesicular body protein 2a, putative
          Length = 224

 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 82/140 (58%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EKKL+ EIK+ AK G   A +++A+ L+R R QI      ++Q++GVA   Q L ++ ++
Sbjct: 40  EKKLIVEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTHAM 99

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
              MKG TKAM  MN+QM      +++ EF++Q+ +M+M  E+M ++I            
Sbjct: 100 GEAMKGVTKAMGQMNRQMNLPSLQRIMLEFERQNEKMEMVTEVMGDAIDDALEGDEEEEE 159

Query: 149 XXXXXNQVLDEIGVGIASQL 168
                NQVLDEIG+ I ++L
Sbjct: 160 TEELVNQVLDEIGININNEL 179