Jatropha Genome Database

JcCB0085161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085161.10 - phase: 0 /partial
         (96 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30221.m002250 J domain-containing protein spf31, putative             153   1e-38
29728.m000817 conserved hypothetical protein                           61   8e-11

>30221.m002250 J domain-containing protein spf31, putative
          Length = 250

 Score =  153 bits (387), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/87 (83%), Positives = 79/87 (90%), Gaps = 2/87 (2%)

Query: 1  MGDKSSTIATATDDDLLLKSFFAEVSEVERDNEVLRILACFKLNPFEHLNLPFDSSPEDV 60
          MGD++S   T TDDDLLLKSFFAEVSEVERDNEV RIL+CFKLNPFE+LNLPFD+S EDV
Sbjct: 1  MGDRTS--PTTTDDDLLLKSFFAEVSEVERDNEVARILSCFKLNPFEYLNLPFDASLEDV 58

Query: 61 KKQYRKLSLLVHPDKCKHPQAKEAFAG 87
          KKQYRKLSLLVHPDKCKHPQAK+AF  
Sbjct: 59 KKQYRKLSLLVHPDKCKHPQAKDAFGA 85


>29728.m000817 conserved hypothetical protein
          Length = 582

 Score = 61.2 bits (147), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%)

Query: 33  EVLRILACFKLNPFEHLNLPFDSSPEDVKKQYRKLSLLVHPDKCKHPQAKEAF 85
           EV RI+A    +P++ + +  + S E++KK+Y K+SLLVHPDKC HPQA +AF
Sbjct: 295 EVTRIMAVEDDSPYDVVGVNHNMSAENIKKRYWKMSLLVHPDKCSHPQAHQAF 347