Jatropha Genome Database

JcCB0084921.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084921.20 - phase: 0 
         (263 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29980.m000180 conserved hypothetical protein                          394   e-110
30138.m003840 conserved hypothetical protein                          235   2e-62
30138.m003841 conserved hypothetical protein                          162   1e-40
30138.m003842 hypothetical protein                                     59   2e-09

>29980.m000180 conserved hypothetical protein
          Length = 301

 Score =  394 bits (1013), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/260 (72%), Positives = 220/260 (84%), Gaps = 3/260 (1%)

Query: 1   MYVTRPLSLYRKFPSALSEEPPEGPYSGYLVITDEETEAENTFCFGFCKKTRVGKLPFPQ 60
           MYVTRPLSLYR  PSALS +PPEGPY+GYLVITDEE EA +T+CFG CKK RV KLPFPQ
Sbjct: 1   MYVTRPLSLYRNCPSALSADPPEGPYTGYLVITDEEAEAHDTYCFGACKKKRVQKLPFPQ 60

Query: 61  DKILNVVHLSENQETTAKKFWFVPVLGQLLSSNCYYVIKAKGRHKGQACRCSRDMDMGLL 120
           DKILNVVH S+ +ET  KK WF+PVL Q LSSNCYYVIKAKGR KGQAC CSRDMDMG L
Sbjct: 61  DKILNVVHFSDYKETLVKKVWFLPVLDQSLSSNCYYVIKAKGRFKGQACTCSRDMDMG-L 119

Query: 121 CCFKKVIKDIRPRPLDPRNTYQEFKISSHYNHSFFAKSLAPYAYPPKLLRNKGWELRISL 180
           CCFKKVI DI+P+PLDPRN YQ+FKI  H+  SFFAKSLAPY +PPKLLR+KGW++RIS 
Sbjct: 120 CCFKKVINDIKPKPLDPRNIYQKFKIHRHHGRSFFAKSLAPYGHPPKLLRDKGWKVRISR 179

Query: 181 RSSRKLQPLINHHALGLDSSARTQLPNFDFPISSQTSSSVTIGTWYCPFMFIKEENARIR 240
             S K +  ++  ALGLD++ RTQLP+FDFPISS+ S SV +GTWYCPF+FI+EE ARI+
Sbjct: 180 SRSYKNKFQLS-EALGLDATLRTQLPSFDFPISSKISPSVVVGTWYCPFVFIREE-ARIK 237

Query: 241 EQMNRSILYRMSLEQYWEEI 260
           EQM +S+LY+M+LEQ+WEEI
Sbjct: 238 EQMKKSMLYKMTLEQHWEEI 257


>30138.m003840 conserved hypothetical protein
          Length = 389

 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 165/264 (62%), Gaps = 13/264 (4%)

Query: 1   MYVTRPLSLYRKFPSALSEEPPEGPYSGYLVITDEETEAENTFCFGFCKKTRVGKLPFPQ 60
           MYVTRPLSLY + PSALS  PPEGP SG LVI DEE  AE T CFG CK  +V  LPFPQ
Sbjct: 1   MYVTRPLSLYLRDPSALSLAPPEGPNSGILVIQDEE--AEPTCCFGLCKSHQVDDLPFPQ 58

Query: 61  DKILNVVHLS---ENQETTAKKFWFVPVLGQLLSSNCYYVIKAKGRHKGQACRCSRDMDM 117
           +K L V + S   +NQ  +  +  F+PVL Q +SSN YY I+ +G+ KG+A + S++ DM
Sbjct: 59  NKNLQVRYSSGAGQNQTVSINRVVFIPVLNQPVSSNRYYCIERRGKRKGEAHQNSKEEDM 118

Query: 118 GLLCCFKKVIKDIRPRPLDPRNTYQEFKISSHYNHSFFAKSLAPYAYPPKLLRNKGWELR 177
              CCF   + D++P+ LD  + YQ+F+I       F AKS+A   +PP  LR KGW + 
Sbjct: 119 -TTCCFCSCVSDLKPQSLDHHDIYQQFEIHRRNWGGFVAKSVASDGFPPDFLRRKGWRVH 177

Query: 178 ISLRSSRKLQPLINHHALGLDSSARTQLPNFDFPISSQTSSSVTIGTWYCPFMFIKEENA 237
            S     +L       A GLD   R +LP+F+FP+S  TSS V +G WYCPFMFIK+   
Sbjct: 178 TSTAHEFELT-----EAQGLDKILRARLPDFNFPLSQNTSSPVVVGKWYCPFMFIKD--G 230

Query: 238 RIREQMNRSILYRMSLEQYWEEIL 261
            +++Q+  S  Y M+LEQ WE+I 
Sbjct: 231 TLKDQIGNSRYYEMTLEQQWEQIF 254


>30138.m003841 conserved hypothetical protein
          Length = 331

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 119/192 (61%), Gaps = 7/192 (3%)

Query: 70  SENQETTAKKFWFVPVLGQLLSSNCYYVIKAKGRHKGQACRCSRDMDMGLLCCFKKVIKD 129
            E++  +  +  F+PV+ Q LSSN YY I+ KGR+ G+A + S++ D    C F   I D
Sbjct: 12  GEHRHVSINRVVFIPVMNQPLSSNQYYCIERKGRNTGEAYKNSKEEDKTTCCFFFTCIID 71

Query: 130 IRPRPLDPRNTYQEFKISSHYNHSFFAKSLAPYAYPPKLLRNKGWELRISLRSSRKLQPL 189
           ++P+PLDP++ YQ+F+I+      F AKS+AP  +PP  LR KGW  R+   S R  +  
Sbjct: 72  LKPQPLDPQDIYQQFEITRRDWGGFVAKSVAPDGFPPHFLRRKGW--RVYTSSPRDFEL- 128

Query: 190 INHHALGLDSSARTQLPNFDFPISSQTSSSVTIGTWYCPFMFIKEENARIREQMNRSILY 249
             + A GLD + R  LP+F FP+S  +S  V +G WYCPFMFIK  +  +++QM+RS  +
Sbjct: 129 --NEASGLDKTIRACLPDFSFPLSEGSSPPVIVGKWYCPFMFIK--DGALKDQMDRSRFH 184

Query: 250 RMSLEQYWEEIL 261
            M+LEQ WE I 
Sbjct: 185 EMTLEQKWERIF 196


>30138.m003842 hypothetical protein
          Length = 111

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query: 179 SLRSSRKLQPLINHHALGLDSSARTQLPNFDFPISSQTSSSVTIGTWYCPFMFIKEENAR 238
           + R S +++        GLD +   +LP+F FP+S  +S +VT+G WYCPFMFIK+ + +
Sbjct: 43  AFRQSHQVRAKGREATSGLDKTILPRLPDFSFPLSEGSSLAVTVGEWYCPFMFIKDLHLK 102

Query: 239 IR 240
           IR
Sbjct: 103 IR 104