Jatropha Genome Database

JcCB0084921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084921.10 - phase: 1 /pseudo
         (389 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29980.m000183 tryptophan synthase beta chain, putative                295   2e-80
29666.m001491 tryptophan synthase beta chain, putative                 98   6e-21
29842.m003632 tryptophan synthase beta chain, putative                 89   3e-18

>29980.m000183 tryptophan synthase beta chain, putative
          Length = 212

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/184 (76%), Positives = 155/184 (84%)

Query: 1   EDQWLGCFPLKEKKMCLRLSNGFRARVKAISNANLKAIEIPEKWYNLIADXXXXXXXXXX 60
           +++WLG F L  K    + SNG RAR KA  NA+ KAI+IP +WYNL++D          
Sbjct: 25  KEKWLGGFALNTKSSPSKFSNGLRARAKASLNADQKAIQIPRQWYNLVSDLPVKPPPALN 84

Query: 61  XXTFEPVKPEDLAPLFPDELIKQEATNEKFIDIPEQVLDIYKLWRPTPLIRAKRLEKLLD 120
             T EPVKPEDLAPLFPDELIKQEA+NEKFIDIPE+VLDIY+LWRPTPLIRAKRLEKLLD
Sbjct: 85  PKTHEPVKPEDLAPLFPDELIKQEASNEKFIDIPEEVLDIYELWRPTPLIRAKRLEKLLD 144

Query: 121 TPAKIYYKYEGVSPAGSHKPNTAVPQVFYNAQQGIKNLVTETGAGQWGCSLAFACSLFGL 180
           TPAKIYYKYEGVSPAGSHKPNTAVPQVFYNAQQGIKN+VTETGAGQWG SLAFACSLFGL
Sbjct: 145 TPAKIYYKYEGVSPAGSHKPNTAVPQVFYNAQQGIKNVVTETGAGQWGSSLAFACSLFGL 204

Query: 181 GCEV 184
           GCE+
Sbjct: 205 GCEI 208


>29666.m001491 tryptophan synthase beta chain, putative
          Length = 394

 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 109/231 (47%), Gaps = 29/231 (12%)

Query: 91  IDIPEQVLDIYK--LWRPTPLIRAKRLEKLLDTPA----KIYYKYEGVSPAGSHKPNTAV 144
           +D  +++  I K  + R TPL  A+RL +    P      IY K E ++  G+HK N A+
Sbjct: 116 LDFQKELDGILKDYVGRETPLYFAERLTEHYGRPNGEGPHIYLKREDLNHTGAHKINNAI 175

Query: 145 PQVFYNAQQGIKNLVTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMMMETW 204
            QV    + G + ++ ETGAGQ G + A  C+ FGL C ++      +++      M   
Sbjct: 176 GQVLLAKRLGKERIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMRLL 235

Query: 205 GAKVHPSPSNVTNAGRDILKKDPSTPGSLGIAISEAVEVAATNAD-TKYCLGSVLN---- 259
           GA+V        ++G   LK           A SEA+    TN + T Y LGSV      
Sbjct: 236 GAEV-----RAVHSGTATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPY 280

Query: 260 --HVLLHQTIMGEECLKQ-MEAIGETPDMIIGCTGGGSNFAGLSFPFIREK 307
              V     I+G E  +Q ME  G  PD+++ C GGGSN  GL   F+ +K
Sbjct: 281 PMMVREFHRIIGTETRRQAMEKWGGKPDVLVACVGGGSNAMGLFDDFVNDK 331


>29842.m003632 tryptophan synthase beta chain, putative
          Length = 463

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 30/214 (14%)

Query: 103 LWRPTPLIRAKRLEKLLDTPA----KIYYKYEGVSPAGSHKPNTAVPQVFYNAQQGIKNL 158
           + R TPL  A+RL            +IY K E ++  G+HK N A+ Q     + G++ +
Sbjct: 120 VGRETPLYYAERLTNHYKNEKGEGPEIYLKREDLNHTGAHKLNNAIAQAMIAKRMGMETV 179

Query: 159 VTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMMMETWGAKVHPSPSNVTNA 218
           V  TGAGQ G + A AC+   L C V+   +  +++    ++M+  GA+V     N  +A
Sbjct: 180 VAATGAGQHGVATAAACAKLSLQCTVFMGTSDMERQSSNVLLMKLLGAEVKAVAGNFKDA 239

Query: 219 GRDILKKDPSTPGSLGIAISEAVEVAATNADTKYCL-GSVL------NHVLLHQTIMGEE 271
                              SEA+     N  T Y L G+V+      + V   Q+++G+E
Sbjct: 240 S------------------SEAIREWVGNLQTSYYLAGTVVGPHPSPSMVREFQSVIGKE 281

Query: 272 CLKQ-MEAIGETPDMIIGCTGGGSNFAGLSFPFI 304
             +Q ME  G  PD+++ C G GSN  GL   FI
Sbjct: 282 TRRQAMEKWGGKPDVLVACVGSGSNALGLFNEFI 315