Jatropha Genome Database

JcCB0083701.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083701.20 - phase: 2 /pseudo/partial
         (174 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29980.m000173 mannose-6-phosphate isomerase, putative                 144   1e-35
30066.m000716 mannose-6-phosphate isomerase, putative                  74   3e-14

>29980.m000173 mannose-6-phosphate isomerase, putative
          Length = 374

 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 85/144 (59%), Gaps = 52/144 (36%)

Query: 83  AYLYGECIECMATSDNVVRAGLTPKHRDIQTLCSMLTYKQ-------------------- 122
           AYLYGECIECMATSDNVVRAGLTPKHRD+QTLCSMLTYKQ                    
Sbjct: 231 AYLYGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILKGFPLSPYIRRYLP 290

Query: 123 --------------------------------AGEGRMYTQLSKDVVTEGDVLFAPANTE 150
                                           AG+G M+T LSK+VV EGDVLFAPAN E
Sbjct: 291 PFDEFEVDSCILSKGESTVFPAVPGPSIFVVTAGKGMMHTGLSKEVVGEGDVLFAPANIE 350

Query: 151 VTITTTSELCLYRAGVNSRFFQIL 174
           + +TT+SEL LYRAGVNSRFFQ L
Sbjct: 351 INVTTSSELRLYRAGVNSRFFQRL 374


>30066.m000716 mannose-6-phosphate isomerase, putative
          Length = 446

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query: 83  AYLYGECIECMATSDNVVRAGLTPKHRDIQTLCSMLTYKQA 123
           AY+ GECIECMA SDNVVRAGLTPK RD+QTL SML Y+Q 
Sbjct: 299 AYVGGECIECMANSDNVVRAGLTPKQRDVQTLLSMLKYRQG 339