Jatropha Genome Database

JcCB0083591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083591.10 + phase: 0 
         (160 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011152 replication factor C / DNA polymerase III gamma-ta...   267   2e-72

>30190.m011152 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 333

 Score =  267 bits (682), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/145 (86%), Positives = 132/145 (91%)

Query: 16  QVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVRQ 75
           +VPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQENVFKVCDQPHPLHVKNMVR 
Sbjct: 189 KVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRH 248

Query: 76  VIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 135
           V+EGK+DDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 249 VMEGKYDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 308

Query: 136 GVGSYXXXXXXXXXXXXVRETAKAS 160
           GVGSY            VR+TA+A+
Sbjct: 309 GVGSYLQLCGLLAKLALVRDTARAA 333