Jatropha Genome Database

JcCB0082871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082871.10 - phase: 2 /partial
         (301 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014530 WD-repeat protein, putative                             314   3e-86
30170.m013860 WD-repeat protein, putative                              83   2e-16
28304.m000171 WD-repeat protein, putative                              59   3e-09

>30147.m014530 WD-repeat protein, putative
          Length = 471

 Score =  314 bits (805), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/301 (56%), Positives = 192/301 (63%), Gaps = 23/301 (7%)

Query: 5   SCTTDGMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMI 64
           +CTTDG+YLAGG+PSGNAYIWEV +G LLKTW AHH SLKCM+F              +I
Sbjct: 92  ACTTDGVYLAGGSPSGNAYIWEVTSGRLLKTWGAHHSSLKCMVFSNDDSLLISGSDDGII 151

Query: 65  CVWSMLSLLDMGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXDATCKAWDLV 121
           C+WSM+SLLDM N                                     DATCKAWDLV
Sbjct: 152 CMWSMISLLDMENSGSSSSLLHYSSEHKSSISGLLTTSGNSNSTFISSSLDATCKAWDLV 211

Query: 122 SGTLVQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVVLE 181
           SG  +Q+Q+YP+ IT I LHP +QFLFAG IDGRIFVS+LN+ LVDDP V+AED LVVLE
Sbjct: 212 SGEPIQSQEYPLAITAIILHPVDQFLFAGCIDGRIFVSMLNVGLVDDPLVIAEDPLVVLE 271

Query: 182 GHKGSITALTFSTLGLISASEDCTISLWDAVSWVPIQKFN------------------PS 223
           GHKGSITALTFSTLGLISASEDCTI LWDAVSWV IQ+FN                  PS
Sbjct: 272 GHKGSITALTFSTLGLISASEDCTICLWDAVSWVAIQRFNYHKGAVTNVVVIQHSLLLPS 331

Query: 224 SNHQRVSYKFRVSLLHKCPLPAANSSKGTVTLLRSCSSAEDNQTSPDFITTSLDHHIFEM 283
           S+HQRV  +  VS L KC  P  NSS GT TL R+C S +DN  S +  T SL+  IFEM
Sbjct: 332 SSHQRVPNRLCVSPLDKCQPP--NSSMGTTTLRRTCFSLDDNYNSLNVGTISLERQIFEM 389

Query: 284 E 284
           E
Sbjct: 390 E 390


>30170.m013860 WD-repeat protein, putative
          Length = 452

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 83/205 (40%), Gaps = 13/205 (6%)

Query: 25  WEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMICVWSMLSLLDMGNXXXXXXX 84
           WEVA G LLK WRAH++++ C++F               + VWS+L + D          
Sbjct: 107 WEVATGRLLKKWRAHYRAVTCLVFTEDDSFLVSGSEDGSVRVWSLLMMFDEYQTEQASQL 166

Query: 85  XXXXXXXXXXXXXXXXX----XXXXXXXXXXDATCKAWDLVSGTLVQTQDYPVGITTIAL 140
                                          D TCK W L  G L++   +P  I ++AL
Sbjct: 167 YEHSFSEHTLRVTDVVTGYGGGNTIIVSASDDRTCKVWSLSKGNLLRNIVFPSIIDSLAL 226

Query: 141 HPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVV---LEGHKGSITALTFSTLG- 196
            P E   +AG  DG I+++ LN     D        L +   L  H   +T L +S  G 
Sbjct: 227 DPGENVFYAGCRDGNIYIAALNA----DSSSTKSHWLHIIGSLSSHSKPVTCLAYSANGN 282

Query: 197 -LISASEDCTISLWDAVSWVPIQKF 220
            L++ SED  I +WD  S   ++ F
Sbjct: 283 LLLAGSEDGIIRVWDPRSHNIVRTF 307


>28304.m000171 WD-repeat protein, putative
          Length = 411

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 9/212 (4%)

Query: 5   SCTTDGMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMI 64
           + T DG YL  G   GN Y   + +G +LK++ AH K + C+                 I
Sbjct: 88  AATPDGSYLFAGGLFGNVYALSIPSGNILKSFPAHSKPVSCINISSDSSLLISGGDDGNI 147

Query: 65  CVWSMLSLLDMGNXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXDATCKAWDL 120
            V  +  L++                                         D+TCK W L
Sbjct: 148 VVVPIFQLVEAPGSENESNLILHSFPAHDGPVTGITVCMGICHPTIVSCSTDSTCKLWSL 207

Query: 121 VSGTLVQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVV- 179
           + G  +QT  +P  I+ IAL PTE   +A   +G I+   L  +      +    +L+  
Sbjct: 208 LDGRNLQTVAFPCSISGIALDPTEVEFYAAGSNGLIYKGSL--QAGSRKGIAQGRKLITW 265

Query: 180 LEGHKGSITALTFSTLG--LISASEDCTISLW 209
            + H G++ ++     G  L+SA+ED ++ +W
Sbjct: 266 TQKHDGAVVSVVVINEGKNLVSAAEDGSVFIW 297