Jatropha Genome Database

JcCB0082241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082241.10 + phase: 0 /pseudo/partial
         (243 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29711.m000331 ER lumen protein retaining receptor, putative           347   3e-96
30120.m000373 ER lumen protein retaining receptor, putative           272   1e-73
30170.m014183 ER lumen protein retaining receptor, putative           256   7e-69
29904.m002932 er lumen protein retaining receptor, putative            98   3e-21
30073.m002241 er lumen protein retaining receptor, putative            87   7e-18
30026.m001475 er lumen protein retaining receptor, putative            86   1e-17

>29711.m000331 ER lumen protein retaining receptor, putative
          Length = 272

 Score =  347 bits (890), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 167/199 (83%), Positives = 179/199 (89%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKLRSSYMDDK 104
           AGLSLKSQELTA+FLAVRLYCSFVMEYDIH            WVIYMIRF L+SSYM+DK
Sbjct: 74  AGLSLKSQELTAMFLAVRLYCSFVMEYDIHTLLDLATLGTTLWVIYMIRFNLKSSYMEDK 133

Query: 105 DNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIVEPF 164
           DNFAIYYVV+PCA+L+ LIHPST H+I+NRI WAFCVYLEAVSVLPQLRVMQNTKIVEPF
Sbjct: 134 DNFAIYYVVVPCAILALLIHPSTSHNIVNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPF 193

Query: 165 TAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYGLWPPMVLLSEVVQTFILADFCYY 224
           TAHYVFALGVARFL+CAHWVLQVLDTRG LL ALGYGLWP MVL+SE+VQTFILADFCYY
Sbjct: 194 TAHYVFALGVARFLSCAHWVLQVLDTRGHLLVALGYGLWPSMVLISEIVQTFILADFCYY 253

Query: 225 YVKSLVGGQLVLRLPSGVV 243
           YVKS+ GGQLVLRLPSGVV
Sbjct: 254 YVKSVFGGQLVLRLPSGVV 272


>30120.m000373 ER lumen protein retaining receptor, putative
          Length = 255

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/196 (66%), Positives = 156/196 (79%), Gaps = 1/196 (0%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKLRSSYMDDK 104
           AGLSLKSQELTALFLAVRL CS VME DIH            WVIYMIRFKL+S+Y+ + 
Sbjct: 59  AGLSLKSQELTALFLAVRLACSIVMEADIHTVLDLATLVSTIWVIYMIRFKLKSTYIKEL 118

Query: 105 DNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIVEPF 164
           DN  +YY+V+P A+L+ LIHP   H  ++RI WAFCVYLE+VSVLPQLR+MQN K++EPF
Sbjct: 119 DNMPLYYMVVPSAILAALIHPYKTHICISRILWAFCVYLESVSVLPQLRLMQNAKMIEPF 178

Query: 165 TAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYG-LWPPMVLLSEVVQTFILADFCY 223
           T+HYVFALGVARFL CAHW++QV +TRGR L  +G G  W PM LL+E VQTFILADFCY
Sbjct: 179 TSHYVFALGVARFLACAHWIIQVYETRGRYLFLVGSGYFWFPMALLAEAVQTFILADFCY 238

Query: 224 YYVKSLVGGQLVLRLP 239
           YY+KS +GGQL++R+P
Sbjct: 239 YYIKSFMGGQLLMRMP 254


>30170.m014183 ER lumen protein retaining receptor, putative
          Length = 221

 Score =  256 bits (654), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 127/144 (88%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKLRSSYMDDK 104
           AGLSLKSQELTA+FLA RLYCSFVMEYDIH            WVIY IRFKLRSSYMDDK
Sbjct: 74  AGLSLKSQELTAIFLAARLYCSFVMEYDIHTLLDSATLLTTLWVIYTIRFKLRSSYMDDK 133

Query: 105 DNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIVEPF 164
           DNFAIYYV+IPCAVLS +IHP+T HHI NRICWAFCVYLEAVSVLPQLRVMQNTKIVEPF
Sbjct: 134 DNFAIYYVLIPCAVLSLIIHPTTQHHIFNRICWAFCVYLEAVSVLPQLRVMQNTKIVEPF 193

Query: 165 TAHYVFALGVARFLNCAHWVLQVL 188
           TAHYVFALGVARFL+CAHWVLQV+
Sbjct: 194 TAHYVFALGVARFLSCAHWVLQVI 217


>29904.m002932 er lumen protein retaining receptor, putative
          Length = 206

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 102/200 (51%), Gaps = 18/200 (9%)

Query: 45  AGLSLKSQELTALFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKL-RSSY 100
           AG+SLK+QEL  L  A R   ++ SF+  Y+               V Y+ R KL R SY
Sbjct: 21  AGVSLKTQELYTLVFATRYLDIFTSFISFYNTMMKLIFLGSSLSI-VWYIRRHKLVRRSY 79

Query: 101 MDDKDNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKI 160
             ++D F  +++V PC + + LIH          + W F +YLEAV++LPQL ++Q T+ 
Sbjct: 80  DKEQDTFHHFFLVAPCLIFALLIHER---FTFKEVMWTFSLYLEAVAILPQLVLLQRTRN 136

Query: 161 VEPFTAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYGLWPPMVLLSEVVQTFILAD 220
           ++  T  YVF LG  R L   +WV        R  T   Y  W  +  +S +VQT + AD
Sbjct: 137 IDNLTGQYVFLLGAYRALYILNWVY-------RYFTEPHYVHW--ITWISGLVQTLLYAD 187

Query: 221 FCYYYVKSLVGGQLVLRLPS 240
           F YYY +S     + L LP+
Sbjct: 188 FFYYYFQSW-KNNVKLHLPA 206


>30073.m002241 er lumen protein retaining receptor, putative
          Length = 215

 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 20/201 (9%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXX-XXXWVIYMIRFK--LRSSYM 101
           AG+SLK+QEL A+    R    F   Y ++              +++ +R+   ++ +Y 
Sbjct: 30  AGISLKTQELYAIVFITRYLDLFTKYYSLYNSIMKLVFIGTSVGIVWYMRYHKVVKQTYS 89

Query: 102 DDKDNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIV 161
             +D F  Y +++   VL+ L+H S     +  + WAF +YLEAV++LPQL ++Q ++ +
Sbjct: 90  KTEDTFRHYVLILASFVLALLVHRSLG---VIEVLWAFSIYLEAVAILPQLLLLQRSRNI 146

Query: 162 EPFTAHYVFALGVARFLNCAHWVLQ--VLDTRGRLLTALGYGLWPPMVLLSEVVQTFILA 219
           +  T +YVF LG  R L   +WV +  V   + R         W P +  S +VQT + A
Sbjct: 147 DNLTVNYVFLLGAYRALYVFNWVYRFFVEGVKVR---------WIPWI--SGLVQTALYA 195

Query: 220 DFCYYYVKSLVGGQLVLRLPS 240
           DF YYY+KS    +  L+LP 
Sbjct: 196 DFFYYYIKSWRNHE-QLKLPE 215


>30026.m001475 er lumen protein retaining receptor, putative
          Length = 215

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 96/200 (48%), Gaps = 18/200 (9%)

Query: 45  AGLSLKSQELTALFLAVR---LYCSFVMEYD-IHXXXXXXXXXXXXWVIYMIRFKLRSSY 100
           +G+SLK+QEL AL    R   L+  F+  Y+ +             W +   R  ++ SY
Sbjct: 30  SGISLKTQELYALVFLTRYLDLFTDFISLYNYVMKVVFIASSLAIVWCMRRHRV-VKRSY 88

Query: 101 MDDKDNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKI 160
             + D F  Y++V  C VL+  +H          I WAF +YLEAV++LPQL ++Q +  
Sbjct: 89  DKELDTFRHYFLVAACFVLALFVHEK---FTFREIFWAFSIYLEAVAILPQLVLLQRSGN 145

Query: 161 VEPFTAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYGLWPPMVLLSEVVQTFILAD 220
           V+  T  YVF LG  R L   +W+        R  T   +  W   +  S +VQT + AD
Sbjct: 146 VDNLTGQYVFFLGAYRALYILNWIY-------RYFTETHFSRWISCI--SGLVQTALYAD 196

Query: 221 FCYYYVKSLVGGQLVLRLPS 240
           F YYY  S       L+LP+
Sbjct: 197 FFYYYFISW-KNNAKLQLPA 215