Jatropha Genome Database

JcCB0081401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0081401.10 + phase: 0 /partial
         (218 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29700.m000771 4-hydroxybenzoate octaprenyltransferase, putative       248   1e-66

>29700.m000771 4-hydroxybenzoate octaprenyltransferase, putative
          Length = 387

 Score =  248 bits (634), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 130/212 (61%), Positives = 149/212 (70%)

Query: 1   MTSFLLSRASWHTTRRALKYCLSSSLPIFNNIAISSSNRTLETNPNFINIFIPTLNQFIQ 60
           M SF+LS A+ +TTR+ L   LSSS  +F N  I SS+ +    P  I I   +LN+F Q
Sbjct: 1   MASFILSHAARNTTRKLLNPFLSSSFSLFCNRVIISSSCSAGLKPTDIVIRTASLNKFTQ 60

Query: 61  SYHCTSLGFKISHENQNPNPLNLKFFREISTLSSSKNNENQENGGSSKEGHQSWIDLYLP 120
           SY+     F+ S E    +  NL+F   ISTLSSSKN +NQENGG SKE   SWI+LYLP
Sbjct: 61  SYYWVPPNFEFSREIHKSDSSNLRFVGGISTLSSSKNKDNQENGGLSKERETSWINLYLP 120

Query: 121 RQARPYARLARLDKPIGTWLLTWPCMWSISLAASPGHLPDLKMMXXXXXXXXXXXXXXCT 180
           R A+PYARLARLDKPIGTWLL WPCMWSISLAASPGHLPD KMM              CT
Sbjct: 121 RHAQPYARLARLDKPIGTWLLAWPCMWSISLAASPGHLPDFKMMVLFGCGALLLRGAGCT 180

Query: 181 INDLLDRDIDTKVERTKLRPIASGLLTPFQGL 212
           +NDLLDRDIDTKVERTKLRP+ASGLL+PFQGL
Sbjct: 181 VNDLLDRDIDTKVERTKLRPVASGLLSPFQGL 212