Jatropha Genome Database

JcCB0080951.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080951.20 + phase: 0 /partial
         (513 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29641.m000398 nascent polypeptide associated complex alpha subun...    69   5e-12
29949.m000119 conserved hypothetical protein                           60   2e-09
29993.m001071 conserved hypothetical protein                           52   1e-06

>29641.m000398 nascent polypeptide associated complex alpha subunit,
           putative
          Length = 687

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 150/393 (38%), Gaps = 58/393 (14%)

Query: 43  DFLRNLELGRQNYKSLLGALAERWWDTTNTFHFSWGEMTMTPTDFSLISGIPFGTRPIEL 102
           DFL +++  R N    + AL ER++  T+T H    E+  TP  +++I+GI FG  P+  
Sbjct: 251 DFL-SIQPFRINSGGYMSALVERYFSETHTLHLGTFEIGPTPLAWTMITGITFGGDPLNP 309

Query: 103 YDDWRTAVTPDRMTELIGIDLPRIVRPSYSTPDLSVSRHWLSLQAP-DIYARHRQGELTA 161
            D     +TP+   +L+G+        + S    S  +  L +  P  +  R +      
Sbjct: 310 PD-----ITPEECIKLLGL------VGTESEGFFSQGKLKLDVLCPLTLDFRKKPANSDL 358

Query: 162 TQVARFTLLLLFASSFWSNRKEKFNPSILKSLEDLAHLTKYDWAGAILSRMYDDM-CDLS 220
             + R  +L L  S F+S         ++ ++ ++  +++YDW  A  S     M    S
Sbjct: 359 EWMFRRLILYLVGSCFFSGPDMMIPIRLVSAMSNIQKISQYDWGAATFSAFLRGMRHKTS 418

Query: 221 RGHCKLSGTYYFWETWAFEYFPYIRPELSRTDLGLGLVPLAWRWYRANHQSVLRHKFLGD 280
                 SG Y F   WA+E+ PY RP    T+    + P A +W                
Sbjct: 419 ECRGTFSGFYPFLLLWAYEHIPYQRP---LTNFDPDIFPRARQW---------------- 459

Query: 281 LRSFFDTCTMDQVEAGAMN-------ARLQSLIEADPYFR--------RSEALSRRRVVL 325
                D   MD   +              +  +  DPY +            LS++R+  
Sbjct: 460 -----DLTKMDVPNSNDFTWYRLELEYLEEDEVNFDPYGKLWEEEGLEYERELSQKRIAF 514

Query: 326 SHPVLRRYYLAERVDFHIRGCRSVPHPPPEDMRAGKQMILTEAH---TEGIPHMEFIRSG 382
                   Y+ ER      G   +PH PP +       ILT A     +G+   + +   
Sbjct: 515 LGLESWELYMGERNLRQFGGGVRIPHSPPAERYGEGSQILTGAARKLLQGVDAWDLLEDK 574

Query: 383 DYDEFCQMFLMQPIGSRLNSLSRSTPSQPLGTR 415
           +Y  + + F    +G R+  L +    + LG R
Sbjct: 575 EY-SYVEWFRANSLG-RIVDLDQFQGRKILGGR 605


>29949.m000119 conserved hypothetical protein
          Length = 918

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 18/198 (9%)

Query: 58  LLGALAERWWDTTNTFHFSWGEMTMTPTDFSLISGIPFGTRPIELYDDWRTAVTPDRMTE 117
           L+ AL ERW   TNTFHF  GEMT+T  D +L+ G+    RP+        ++  +R+  
Sbjct: 75  LISALVERWRRETNTFHFGVGEMTVTLQDVALLLGLAIDGRPVIGITHTTCSLVCERL-- 132

Query: 118 LIGIDLPRIVRPSYSTPDLSVSRHWLSLQAPDIYARHRQGELTATQVARFT---LLLLFA 174
                L +    SY++  + V   WL       Y  H        +V R T   LL L  
Sbjct: 133 -----LGKAPDSSYASGGM-VKLSWLKE-----YFSHCPENAPIEEVERCTRAYLLYLVG 181

Query: 175 SSFWSNRKEKFNPSI-LKSLEDLAHLTKYDWAGAILSRMYDDMCDLS-RGHCKLSGTYYF 232
           S+ +S       P + L   E+      + W  A L+ +Y  + +   +    + G    
Sbjct: 182 STIFSTTTGNKVPVMYLPLFENFEEAGNFAWGAAALAFLYRALGNACVKSQSTICGCLTL 241

Query: 233 WETWAFEYFPYIRPELSR 250
            + W++ +    RP+L+R
Sbjct: 242 LQCWSYFHLNIGRPKLNR 259


>29993.m001071 conserved hypothetical protein
          Length = 837

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 24/199 (12%)

Query: 58  LLGALAERWWDTTNTFHFSWGEMTMTPTDFSLISGIPFGTRPIELYDDWRTAVTPDRMTE 117
           L+ AL ERW   TNTFH   GEMT+T  D +L+ G+     P+         VT      
Sbjct: 96  LISALIERWRKETNTFHLRVGEMTITLEDVALLLGLAIDGEPV-------LGVTYTSCKP 148

Query: 118 LIGIDLPRIVRPSYSTPDLSVSRHWLS---LQAPDIYARHRQGELTATQVARFT---LLL 171
           +    L ++    Y +  + V   WL     Q P+        +    ++ R T   LL 
Sbjct: 149 ICEKFLGKVPDAGYMSGGM-VKLSWLKEYFSQCPE--------DAPLEEIERHTRAYLLY 199

Query: 172 LFASSFWSNRKEKFNPSI-LKSLEDLAHLTKYDWAGAILSRMYDDMCDLS-RGHCKLSGT 229
           L  S+ +S       P + L   ED      Y W  A L+ +Y  +   + +    +SG 
Sbjct: 200 LVGSTIFSTTTGNKVPIMYLPLFEDFEKAGNYAWGAAALAFLYRALGRATLKSQSTISGC 259

Query: 230 YYFWETWAFEYFPYIRPEL 248
               + W++ +    +P+ 
Sbjct: 260 LTLLQCWSYFHLNIAQPKF 278