Jatropha Genome Database

JcCB0080851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080851.20 - phase: 1 /partial
         (116 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28256.m000141 Shikimate kinase, chloroplast precursor, putative       156   2e-39
28644.m000929 Shikimate kinase, chloroplast precursor, putative        89   6e-19
30131.m007013 similarity to shikimate kinase, putative                 70   1e-13

>28256.m000141 Shikimate kinase, chloroplast precursor, putative
          Length = 313

 Score =  156 bits (394), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 83/92 (90%)

Query: 1   SVLESGSLPVSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSFC 60
           SVLESGSL  SSDESLILK+KSQ V PY++GRCIYLVGMMGSGKTTVGKVLSQVL YSFC
Sbjct: 76  SVLESGSLHASSDESLILKNKSQVVEPYLSGRCIYLVGMMGSGKTTVGKVLSQVLGYSFC 135

Query: 61  DCDTLIEEEVQGISVAEIFKLYGEGYFRNKEV 92
           DCD+LIE++V G SVAEIFKLYGEG+FR KE 
Sbjct: 136 DCDSLIEQDVDGTSVAEIFKLYGEGFFRMKET 167


>28644.m000929 Shikimate kinase, chloroplast precursor, putative
          Length = 282

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 61/89 (68%)

Query: 3   LESGSLPVSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSFCDC 62
           L SG++  S D   +LK K ++V   + G C++LVGMMGSGKTTVGK+LS+ L Y+F D 
Sbjct: 74  LLSGNICGSFDGYWLLKTKGKKVASGLKGCCVFLVGMMGSGKTTVGKILSEALGYTFVDS 133

Query: 63  DTLIEEEVQGISVAEIFKLYGEGYFRNKE 91
           D  +E+   G SV+ IF+ YGE YFR+ E
Sbjct: 134 DEYVEQTAGGNSVSHIFQQYGEDYFRDIE 162


>30131.m007013 similarity to shikimate kinase, putative
          Length = 292

 Score = 70.5 bits (171), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 48/80 (60%)

Query: 13  DESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSFCDCDTLIEEEVQG 72
           D SL LK ++ ++ P + G  I+LVGM  S KT++GK+L+  L Y + D D+L+EE   G
Sbjct: 81  DSSLALKKRAADISPELKGTSIFLVGMRSSMKTSLGKLLADSLRYYYFDSDSLVEEVASG 140

Query: 73  ISVAEIFKLYGEGYFRNKEV 92
            S A+ FK   E  FR  E 
Sbjct: 141 ASAAKSFKETDEKGFRESET 160