Jatropha Genome Database

JcCB0080851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080851.10 + phase: 0 /partial
         (156 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30099.m001692 conserved hypothetical protein                           94   3e-20
29736.m002077 conserved hypothetical protein                           62   2e-10

>30099.m001692 conserved hypothetical protein
          Length = 200

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 76/139 (54%), Gaps = 15/139 (10%)

Query: 20  FNSDPKLTIRFISLKSTPLPRLLFPLAPQASKRVFXXXXXXXXXXXIVDDHGIWSRSIXX 79
           FN  PK  I+F S KS PL         +AS+R             +++D   W RSI  
Sbjct: 24  FNHHPKFNIQFFSSKS-PL---------RASRR---SISNTTNTSNLINDPRNWGRSINT 70

Query: 80  XX--XXXXXXXXXXXXXXXXXXXXXXVRFIQNLFKKVSKQAREAVRSVLPVSISTKLVTF 137
                                     VRFIQN+FKKVSK+AR+A RSVLP+SISTKLV F
Sbjct: 71  SELFDDGNDDDEEEEEEEEDRSLDLFVRFIQNVFKKVSKRARKAARSVLPLSISTKLVGF 130

Query: 138 SVNGVLVLAFLWVLKAFLE 156
           SVNGVL+LAFLWVLKAFLE
Sbjct: 131 SVNGVLILAFLWVLKAFLE 149


>29736.m002077 conserved hypothetical protein
          Length = 254

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 45/52 (86%)

Query: 105 RFIQNLFKKVSKQAREAVRSVLPVSISTKLVTFSVNGVLVLAFLWVLKAFLE 156
           +F+Q++FKK+SK+A++A RS+LP  IS +LV+F+V+G+L+LA L ++KA LE
Sbjct: 156 KFLQSMFKKISKRAKKASRSILPSVISPQLVSFAVDGILLLAALSIVKALLE 207