Jatropha Genome Database

JcCB0080711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080711.10 + phase: 0 
         (111 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27524.m000292 conserved hypothetical protein                           72   4e-14

>27524.m000292 conserved hypothetical protein
          Length = 111

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 63/117 (53%), Gaps = 12/117 (10%)

Query: 1   MSFASLRRXXXXXXXXXXXXXXXXXXXXXFSDCNCKAGAIRIFPDDNGIMSTSKE----- 55
           MSF S RR                     +   +CKA AIR FPD++   +++ E     
Sbjct: 1   MSFDSSRRVLFSSSMMMVVAVLLIFLLQIWICSDCKAEAIRAFPDNSNSNNSNMEKLRER 60

Query: 56  -RNITSNSYKASKDDLFHKFKFFNGRQPXXXXXXXRTEKGFEENKRRVPSCPDPLHN 111
            RNI ++ + ASK DLF KF  F+GR         RTEKGFE+NKRRVPSCPDPLHN
Sbjct: 61  RRNIPAD-HNASKVDLFRKF--FDGR---VSSFNNRTEKGFEDNKRRVPSCPDPLHN 111