Jatropha Genome Database

JcCB0080131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080131.10 + phase: 0 /partial
         (210 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001687 conserved hypothetical protein                          205   1e-53

>29680.m001687 conserved hypothetical protein
          Length = 211

 Score =  205 bits (522), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/133 (78%), Positives = 110/133 (82%)

Query: 4   TRFSRSVPENKRLVCVXXXXXXXXXPDSDLNPYEVLGVSPFEGFDKVKAAYTKKLKEAES 63
            RF R+ PENK+LVC          PDSDLNPYEVLGVS  EGFD VKA YTKK KEAE 
Sbjct: 35  VRFLRTSPENKKLVCAAASAAGSSSPDSDLNPYEVLGVSSIEGFDVVKAKYTKKRKEAEM 94

Query: 64  IGDEVTASLLEKAYDKLMMSQLTSRKKGVAYGSFKVSKDIKYADKQPIVPWGPRFAKSSI 123
           IGDE T + LEKAYDKLMMSQLTSRKKG+AYGSFKVSKDIKYADKQPIVPWGPRFAKSS+
Sbjct: 95  IGDEATTARLEKAYDKLMMSQLTSRKKGMAYGSFKVSKDIKYADKQPIVPWGPRFAKSSV 154

Query: 124 QDMRINLAISGAF 136
           QDMRINLAIS AF
Sbjct: 155 QDMRINLAISAAF 167