Jatropha Genome Database

JcCB0080001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080001.10 - phase: 0 
         (303 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013898 hypothetical protein                                    178   3e-45

>30170.m013898 hypothetical protein
          Length = 209

 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 96/115 (83%), Gaps = 3/115 (2%)

Query: 189 FEVSHILKRYVRKVRPLLFFKGRREDHHLQLHRQSHSFSGNLSLRNKLELGRGRRGEYSA 248
           FEVS +LKRYVR VRPLLFFKGRRE   LQ HRQ +SFSGNLS +NK EL RGRRGEYSA
Sbjct: 98  FEVSQVLKRYVRMVRPLLFFKGRREK--LQFHRQPYSFSGNLSWKNKQEL-RGRRGEYSA 154

Query: 249 PASMRTSPTNSGLLVATATLPSSTSDSTMEELXXXXXXXXXHCKNSIAAEDKIKC 303
           PASMRTSPTNSGLLVATA++PSSTSDSTMEEL         HCKNSIAAE+KIKC
Sbjct: 155 PASMRTSPTNSGLLVATASIPSSTSDSTMEELQAAIQAAIAHCKNSIAAEEKIKC 209