Jatropha Genome Database

JcCB0079761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0079761.10 + phase: 2 /pseudo/partial
         (165 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30073.m002313 origin recognition complex subunit, putative            213   5e-56

>30073.m002313 origin recognition complex subunit, putative
          Length = 715

 Score =  213 bits (541), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 112/127 (88%)

Query: 1   DYMQPIESIAFHEIVCFKHVEQLQVALIGDPRKRIQVDLLEFHNIIRCSCCSRSGNSLLP 60
           +++QP+E I FHEI+CFK V+ LQ AL+G PR+RIQVDLLEFHNII CSCC RSGNSLLP
Sbjct: 546 NHLQPVECIPFHEIICFKSVDNLQAALLGHPRRRIQVDLLEFHNIIHCSCCRRSGNSLLP 605

Query: 61  SMNDSSIMYSLAREQDDLINLHDWYQSFKLVILSSSNKGKHRTKHFPSPKKRKVATEAAK 120
           S++DSSIMYSLA+E  DL+NLHDWYQSFK VILSSSNKGKHR+KH PSPKKRKV TE AK
Sbjct: 606 SVHDSSIMYSLAQEHGDLVNLHDWYQSFKSVILSSSNKGKHRSKHSPSPKKRKVTTETAK 665

Query: 121 PTEESIQ 127
           P+E SIQ
Sbjct: 666 PSEASIQ 672