Jatropha Genome Database

JcCB0078661.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078661.20 - phase: 0 
         (175 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007082 Late embryogenesis abundant protein, putative           108   2e-24

>30131.m007082 Late embryogenesis abundant protein, putative
          Length = 189

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 1   MADLRDEYGNPIQLTDEHGNPVELTDEHGNPVHITGLATSKPATIA-NVLQIDVPDTGLL 59
           MAD+RDE+GNP+QLTDEHGNPV+LTDE G PVH+TG AT++P   +  V+Q +VP TGLL
Sbjct: 1   MADIRDEFGNPVQLTDEHGNPVQLTDEQGKPVHLTGFATTEPPIASTTVVQSEVPPTGLL 60

Query: 60  AST--EEPPKGHT-----GEH-VGGAEPEPVKAXXXXXXXXXXXXXXXXXXXXXXXXXXX 111
           AS+  EE  +  T     GEH   G E +  K                            
Sbjct: 61  ASSGKEEVTESRTTAPIAGEHGAAGDEDKYKKEEKMDEGSKDVQRSSSSSSSSSEDDGQG 120

Query: 112 XXXXXXXXXXXXXXXXXXXXHKEEHKQ----TAITETTPGDPQHHQHEKKSVMEKIKEKL 167
                               HKEEH Q    +  T  T     H  HEKKS+MEKIKEKL
Sbjct: 121 GRRKKKGLKEKIKEKLTGGKHKEEHGQTESVSTTTTATAPAEAHQAHEKKSMMEKIKEKL 180

Query: 168 PGHHSH 173
           PGHHSH
Sbjct: 181 PGHHSH 186