Jatropha Genome Database

JcCB0078111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078111.10 - phase: 0 /partial
         (316 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30032.m000470 conserved hypothetical protein                          405   e-113
30055.m001595 mRNA decapping enzyme 1A, putative                      273   5e-74

>30032.m000470 conserved hypothetical protein
          Length = 366

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/312 (67%), Positives = 218/312 (69%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG
Sbjct: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS
Sbjct: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVIEGPLXXXXXXXXXXX 180
           RECEEVANLF+RILNAY              EFEELEAVPSMSVIEGPL           
Sbjct: 121 RECEEVANLFTRILNAYSKVPPKSKVPSSKSEFEELEAVPSMSVIEGPLEPSSTASAATD 180

Query: 181 XXXXXXXXXXXNATMVIGSSAANLANSRQPYHSTATIPLSTHTPNVVSPPSHNPQIXXXX 240
                       A   IGSSA+NLANSRQPY S AT+PLS+H PN+V PPS  PQI    
Sbjct: 181 GPEDSSFESFFTAATNIGSSASNLANSRQPYPSPATVPLSSHAPNIVLPPSQTPQIPTLS 240

Query: 241 XXXXXXXVAIHDAPDPISSSNRVTNLVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
                  V I + PDPISSSNRVTNLVK                                
Sbjct: 241 LSPLPASVTIRETPDPISSSNRVTNLVKPSSFFTPPSSSAPVAPPISSAVPTAPSLHPPL 300

Query: 301 XXQRPYGTPLLQ 312
             QRPYGTP+LQ
Sbjct: 301 NLQRPYGTPMLQ 312


>30055.m001595 mRNA decapping enzyme 1A, putative
          Length = 210

 Score =  273 bits (699), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 140/220 (63%), Positives = 157/220 (71%), Gaps = 13/220 (5%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQ GKLMPN+DQQSTK+LNLTVLQRIDPF+EEILITAAH             SRKDVEG
Sbjct: 1   MSQNGKLMPNIDQQSTKLLNLTVLQRIDPFVEEILITAAH-------------SRKDVEG 47

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKRNTQPRFQFIVMNRRNT+NLVENLLGDFEYEVQVPYLLYRN AQEVNGIWFYN+
Sbjct: 48  SLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQVPYLLYRNGAQEVNGIWFYNA 107

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVIEGPLXXXXXXXXXXX 180
           RECEEVANLFSRI+NAY              EFEELEAVP+M+V++GPL           
Sbjct: 108 RECEEVANLFSRIINAYSKVPQKSKVAPTKSEFEELEAVPTMAVMDGPLEPSASAASNVA 167

Query: 181 XXXXXXXXXXXNATMVIGSSAANLANSRQPYHSTATIPLS 220
                       +T +  S+A+N     QPY S+  +P+S
Sbjct: 168 DAPDDPAFVNFFSTAITISNASNATVVGQPYQSSNPVPVS 207