Jatropha Genome Database

JcCB0076151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0076151.10 + phase: 0 /pseudo
         (220 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005341 Meiotic coiled-coil protein, putative                   187   3e-48

>29912.m005341 Meiotic coiled-coil protein, putative
          Length = 227

 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 110/176 (62%), Gaps = 1/176 (0%)

Query: 1   MQSKKRGLSLDEKREKILQIFYESQDFFXXXXXXXXXXXXXVIXXXXXXXXXXXXXXXXX 60
           MQSKKRGLSLDEKREKILQIFY+SQDFF             VI                 
Sbjct: 1   MQSKKRGLSLDEKREKILQIFYDSQDFFLLKELEKLGPKKGVISQSVKDVVQSLVDDDLV 60

Query: 61  XXXKIGTSVYFWSLPSCAGNQLRNVYRRLESDVQSSKKRYAELVDQCGGLKKGXXXXXXX 120
              KIGTSVYFWSLPSCAGNQLRNVY  LESD+QSSKKRYAELVD+C GLKKG       
Sbjct: 61  SKDKIGTSVYFWSLPSCAGNQLRNVYCNLESDLQSSKKRYAELVDRCDGLKKGREESDER 120

Query: 121 XXXXXXXXXXXXKHNELKEEMGQYADNDPAAFEAMKSYTAKTAQITSSRCDNGVQT 176
                       KH+ELKEEMGQYADNDPAAFEAMK+   + A   ++R  + + T
Sbjct: 121 EEALADLKAIELKHSELKEEMGQYADNDPAAFEAMKT-AIEVAHAAANRWTDNIFT 175