Jatropha Genome Database

JcCB0075891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075891.10 - phase: 0 /partial
         (143 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004627 conserved hypothetical protein                          115   6e-27

>29848.m004627 conserved hypothetical protein
          Length = 426

 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 87/133 (65%), Gaps = 19/133 (14%)

Query: 12  MDFDNLVVPIDGL-ETAHQNGVREQSPASGEEGVFSNSANGNIEKITVSTEPDGNLDDAS 70
           M+FD+  VPIDGL ET+H+NG+ EQS AS ++GV SN                GNL++AS
Sbjct: 1   MEFDD-TVPIDGLVETSHRNGIHEQSLASMDDGVVSN----------------GNLENAS 43

Query: 71  KLEDSGTGN-SYAVEFREGSNVHVGSNGFTGSKEGELKDGSQSEQVKSLKGPGKGKNEKP 129
           KLEDS T N S A E  E SNVHVGSNG TG KEG +K+   SE  KSLKGPGK K+EK 
Sbjct: 44  KLEDSITSNTSSAGEVCERSNVHVGSNGLTGCKEGNVKNEGHSEHAKSLKGPGKSKSEKS 103

Query: 130 SNRKTVSATXEKK 142
           SN K  SAT  KK
Sbjct: 104 SNPKNTSATQLKK 116