Jatropha Genome Database

JcCB0074501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0074501.10 + phase: 2 /partial
         (270 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29742.m001383 WD-repeat protein, putative                             349   1e-96
28197.m000034 WD-repeat protein, putative                             218   3e-57
30068.m002545 WD-repeat protein, putative                             214   4e-56
30136.m001016 WD-repeat protein, putative                             184   5e-47
28460.m000081 WD-repeat protein, putative                             139   2e-33
30025.m000574 WD-repeat protein, putative                             108   2e-24

>29742.m001383 WD-repeat protein, putative
          Length = 608

 Score =  349 bits (895), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 179/255 (70%), Positives = 203/255 (79%), Gaps = 2/255 (0%)

Query: 14  GSDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYR 73
            SD  LQL+AQ CLQGKKKS  KRITGFQ+  SDP++LMVTSADS+VRI+DGVDVICKYR
Sbjct: 354 ASDNHLQLYAQICLQGKKKSPFKRITGFQFSPSDPTKLMVTSADSQVRIIDGVDVICKYR 413

Query: 74  GIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWACEHFFSNNASV 133
           G+HNAGSQISA FTS GTHI+SASEDSN+Y+WNY +++ PVPRVK  WACEHFFSNNASV
Sbjct: 414 GLHNAGSQISASFTSDGTHIVSASEDSNVYIWNYIMQEVPVPRVKNIWACEHFFSNNASV 473

Query: 134 AIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXXXXXXXX 193
           AIPWPG   GNS + +I  T L  MNSE  N+++MS+H E GESS+ K            
Sbjct: 474 AIPWPGTIHGNSVAINISGTMLSSMNSELSNDDRMSIHSESGESSRRKLPFSSPDNFPTR 533

Query: 194 HGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQSVHGSPHAWNLAIVTAG 253
           HGFFSESLPKGSATWPEENLPSS S    M KSQYKFL+ + QS+HGSPHA  L IVTAG
Sbjct: 534 HGFFSESLPKGSATWPEENLPSSSSGI-SMSKSQYKFLK-AIQSMHGSPHALGLVIVTAG 591

Query: 254 WDGRIRWFQNYGLPV 268
           WDGRIRWFQNYGLP+
Sbjct: 592 WDGRIRWFQNYGLPL 606


>28197.m000034 WD-repeat protein, putative
          Length = 714

 Score =  218 bits (554), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/272 (50%), Positives = 159/272 (58%), Gaps = 25/272 (9%)

Query: 2   VALVNTNWCILHGSDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVR 61
           V  +  N    + SD  LQL A+ CL+ KKKS  K ITGFQ+F  D ++LMVTSADS+VR
Sbjct: 465 VGSIEGNCRFYNMSDSHLQLDAEICLRSKKKSPCKTITGFQFFPQDSTKLMVTSADSQVR 524

Query: 62  ILDGVDVICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVP-RVKTN 120
           IL G++VI KY+G+ NA SQ+SA FTS G HIISASEDSN+Y+WN   +   VP + K  
Sbjct: 525 ILQGLNVIGKYKGLKNASSQMSASFTSDGKHIISASEDSNVYMWNCINQQENVPVQAKKI 584

Query: 121 WACEHFFSNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQC 180
            +CE  FS NASVAIPW GL  GN      +R    F  S   + E M            
Sbjct: 585 RSCER-FSTNASVAIPWSGLRHGN------LRNGWGFHVSNGYSPEVMPF---------- 627

Query: 181 KXXXXXXXXXXXXHGFFSESLPKGSATWPEENLP--SSLSMSPKMFKSQYKFLRTSYQSV 238
                          +F ES PKGSATWPEE LP  S  S S  M KS  KFL  S Q+ 
Sbjct: 628 ----SSPASFFLGQEYFLESYPKGSATWPEEKLPVSSPFSASSGMNKSHCKFLEASRQNT 683

Query: 239 HGSPHAWNLAIVTAGWDGRIRWFQNYGLPVRL 270
             S HAW L IVTAGWDGRIR F NYGLPV +
Sbjct: 684 AIS-HAWGLVIVTAGWDGRIRSFHNYGLPVSV 714


>30068.m002545 WD-repeat protein, putative
          Length = 743

 Score =  214 bits (544), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 124/265 (46%), Positives = 160/265 (60%), Gaps = 21/265 (7%)

Query: 16  DGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYRG- 74
           D +LQL +Q  LQGKKK   +RITGF++  SDPS+++VTSADS VR+L G+DVICK+R  
Sbjct: 490 DNKLQLDSQISLQGKKKLTGRRITGFEFSPSDPSKVVVTSADSLVRVLCGMDVICKFRAS 549

Query: 75  -IHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWACEHFFSNNASV 133
            I  A +Q+SA FTS G H++S SEDSNIYVWNY  ++    RVK   + + F S NAS+
Sbjct: 550 SIGVAANQMSASFTSDGKHVLSTSEDSNIYVWNYNSEEKSSSRVKKIQSYQSFASQNASI 609

Query: 134 AIPW------PGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXX 187
           AIPW      PG      A  D+         S        S HK  GE+   K      
Sbjct: 610 AIPWCGIENVPGPLVPPKADGDL---------SGNSGLHGHSHHKFFGETDH-KVLPSSP 659

Query: 188 XXXXXXHGFFSESLPKGSATWPEENLPSS--LSMSPKMFKSQYKFLRTSYQSVHGSPHAW 245
                  G   +SL +GSATWPEE LP S  +++SP   K +Y+FL+++  S+  SPH W
Sbjct: 660 DCFSLTRGLLLDSLTRGSATWPEEKLPDSSPVALSPTKCK-EYRFLKSACNSIFSSPHLW 718

Query: 246 NLAIVTAGWDGRIRWFQNYGLPVRL 270
            L IVTAGWDGRIR + NYGLP+R+
Sbjct: 719 GLVIVTAGWDGRIRTYLNYGLPLRI 743


>30136.m001016 WD-repeat protein, putative
          Length = 654

 Score =  184 bits (466), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/272 (41%), Positives = 153/272 (56%), Gaps = 27/272 (9%)

Query: 7   TNWCILHGSDGR-LQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDG 65
           T  C  + + G  LQL A+  +QG+K++A  RITG Q+    P R+M++S DSK+RILDG
Sbjct: 402 TGTCRFYEASGNDLQLGAEIHVQGRKRTAGNRITGIQFSQERPQRVMISSEDSKLRILDG 461

Query: 66  VDVICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTN-WACE 124
           VD++ KY+G+  +GSQ+SA FTSGG HIIS  ED  +YVW+Y     P  + K +  +CE
Sbjct: 462 VDIVHKYKGLPKSGSQMSASFTSGGKHIISVGEDCRVYVWDYDELCTPSSKHKKSVRSCE 521

Query: 125 HFFSNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXX 184
           HFFS   S+A+PW G           MR  L  ++S        S+H  +  S +     
Sbjct: 522 HFFSEGVSIAVPWSG-----------MRKELKDVDS-------GSIHSRM-PSEEGTSRR 562

Query: 185 XXXXXXXXXHGFFSESLPKG-SATWPEENLPS-SLSMSPKMFKSQ-YKFLRTSYQSVHGS 241
                    + FF +   +G SATWPEE LP   ++M+ +  + Q Y+  +      HG 
Sbjct: 563 RDSERFSLGNWFFIDGPCRGSSATWPEEKLPHWDIAMAEEECQHQHYENFQQQLIKTHGH 622

Query: 242 ---PHAWNLAIVTAGWDGRIRWFQNYGLPVRL 270
              P+AW L I TAGWDG IR F NYGLPVRL
Sbjct: 623 TTLPNAWGLVIATAGWDGTIRTFHNYGLPVRL 654


>28460.m000081 WD-repeat protein, putative
          Length = 944

 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/274 (36%), Positives = 143/274 (52%), Gaps = 22/274 (8%)

Query: 10  CILHG-SDGRLQLHAQKCLQGKKKSASKR-ITGFQYFSSDPSRLMVTSADSKVRILDGVD 67
           C L+  S+ +LQ   Q  LQ KKK A  + ITGFQ+     S +++TSADS+VR++DGVD
Sbjct: 680 CRLYSTSENKLQQKCQINLQNKKKKAHLKKITGFQFARESSSEVLITSADSRVRVIDGVD 739

Query: 68  VICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPR--VKTNWACEH 125
           ++ K++G  NA SQISA  T+ G +++SASEDS +YVW +  +  P     V    + EH
Sbjct: 740 LVHKFKGFRNANSQISASLTANGKYVVSASEDSYVYVWKHEAESRPSRNKGVTITRSYEH 799

Query: 126 FFSNNASVAIPWPGLAC---------GNSASSDIMRTTLPFMNSERCNEEQMSVHKELGE 176
           F   + SVAIPWPG+           G     D     +   N      E++S +     
Sbjct: 800 FHCQDVSVAIPWPGMGDIWGLQDTLPGEQNGLDNHLDEVSIANHPPTPVEEISSNNGSQS 859

Query: 177 SSQCKXXXXXXXXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQ 236
            S C             +G+F + +   SATWPEE     L+++ + +  +      S  
Sbjct: 860 LSGCTNSPLNGIICSATNGYFFDRI---SATWPEEK----LNLATRTWSPRSSVDIASGM 912

Query: 237 SVHGSPHAWNLAIVTAGWDGRIRWFQNYGLPVRL 270
           S + S  A+ + IVTAG  G IR FQN+GLPVR+
Sbjct: 913 SQNMS--AYGMVIVTAGLRGEIRTFQNFGLPVRI 944


>30025.m000574 WD-repeat protein, putative
          Length = 939

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/131 (45%), Positives = 83/131 (63%), Gaps = 4/131 (3%)

Query: 16  DGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYRGI 75
           D +L    Q  LQ KK +  K+ITGFQ+   +PS ++VTSADS++RILDG DV  K+RG 
Sbjct: 625 DCKLSQGEQIDLQNKKHA--KKITGFQFSPGNPSEVLVTSADSRIRILDGSDVAHKFRGF 682

Query: 76  HNAGSQISALFTSGGTHIISASEDSNIYVWNYAIK--DGPVPRVKTNWACEHFFSNNASV 133
            N  SQISA F++ G ++I ASEDS++YVW    +  +G    +    + E+F   + S+
Sbjct: 683 RNINSQISASFSTDGKYVICASEDSHVYVWKRDERSGNGKSKSIINTRSHENFQCKDVSM 742

Query: 134 AIPWPGLACGN 144
           AIPWPG   G+
Sbjct: 743 AIPWPGTIKGD 753