Jatropha Genome Database

JcCB0073371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0073371.10 - phase: 2 /partial
         (280 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013673 conserved hypothetical protein                          346   6e-96
44978.m000014 conserved hypothetical protein                          345   1e-95

>30170.m013673 conserved hypothetical protein
          Length = 617

 Score =  346 bits (888), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 190/267 (71%), Positives = 212/267 (79%), Gaps = 3/267 (1%)

Query: 1   MFLNKENLGERMQDSPSLSMPPSNINMKSRENPFLNLEQQNSYQESSQIEFGLVNSDSLL 60
           M LNKENLGER+QDSPSLSM  S I +KS+ENPF     ++ YQESSQIEFG VN DSLL
Sbjct: 338 MILNKENLGERLQDSPSLSMQSSKIYLKSKENPFF--ISKHPYQESSQIEFGHVNFDSLL 395

Query: 61  NPSQNGSSLIS-RNFGSSKELIGQETISQHSVRQFMDDWPKSQCDQSAVSWPPLDVQSNR 119
           NPSQN SSLIS RNF SS+++ GQETISQHS RQFMDDWPKSQ DQS+VSWP LDVQS+R
Sbjct: 396 NPSQNSSSLISCRNFASSQDMSGQETISQHSFRQFMDDWPKSQSDQSSVSWPQLDVQSDR 455

Query: 120 TQLSISIPIASADFXXXXXXXNNEKIAPSPLRLSCDLDSIKMGTGTGIILNEQNQRHANW 179
           TQLSISIP    DF       +NE  A SPLRLS DLDSI+ GTG  I+ N+  Q+ ANW
Sbjct: 456 TQLSISIPNDPTDFKSSTSSPSNEIFAVSPLRLSRDLDSIQTGTGVDIVFNDHKQKQANW 515

Query: 180 IPIPWGTSMGGPLGEVLHNTNNTASECKNSSALNLLAEGWDCSPRLGSSPTGVLQKTTFH 239
            P+PW TS+GGPLGEVLHN+NN+ASECKNSS LNLL E WD S +LG SPTGVLQKTTF 
Sbjct: 516 RPVPWETSVGGPLGEVLHNSNNSASECKNSSGLNLLVERWDSSSQLGLSPTGVLQKTTFG 575

Query: 240 SLSNSSAGSSPRAENNKNTEGASLSND 266
           SLSNSSAGSSPR ENN+  EGASL +D
Sbjct: 576 SLSNSSAGSSPRTENNRTREGASLCSD 602


>44978.m000014 conserved hypothetical protein
          Length = 352

 Score =  345 bits (886), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 187/268 (69%), Positives = 217/268 (80%), Gaps = 9/268 (3%)

Query: 1   MFLNKENLGERMQDSPSLSMPPSNINMKSRENPFLNLEQQNSYQESSQIEFGLVNSDSLL 60
           +FLNKE +GER+QDSP LSM  S +++KS+E+PFL        +ESSQIEFGLVNSDSLL
Sbjct: 77  IFLNKEKVGERLQDSPGLSMLTSQVDLKSKESPFL------VSKESSQIEFGLVNSDSLL 130

Query: 61  NPSQNGSSLIS-RNFGSSKELIGQETISQHSVRQFMDDWPKSQCDQSAVSWPPLDVQSNR 119
           NPSQN S LIS RNFGSS++L  Q+T+SQHSVRQFMDDWPKSQ D+SAVSWP LDVQS+R
Sbjct: 131 NPSQNSSPLISCRNFGSSQDLTDQDTVSQHSVRQFMDDWPKSQSDRSAVSWPQLDVQSDR 190

Query: 120 TQLSISIPIAS-ADFXXXXXXXNNEKIAPSPLRLSCDLDSIKMGTGTGIILNEQNQRHAN 178
           TQLSISIPI   AD+       NNEK+  SPLRLS DLD I+MG G G ++N+QNQR AN
Sbjct: 191 TQLSISIPIGHHADYMSSTSSPNNEKVTLSPLRLSRDLDPIQMGLGVGSVINDQNQRQAN 250

Query: 179 WIPIPWGTSMGGPLGEVLHNTNNTASECKNSSALNLLAEGWDCSPRLGSSPTGVLQKTTF 238
           WIPI W TS+GGPLGEVLHNT+N+A ECK+SSALNL+ EGWD SP++GSSPTGVLQKTTF
Sbjct: 251 WIPISWETSIGGPLGEVLHNTSNSA-ECKSSSALNLMTEGWDSSPQVGSSPTGVLQKTTF 309

Query: 239 HSLSNSSAGSSPRAENNKNTEGASLSND 266
            SLSNSS GSSPRAEN K +EG  +  D
Sbjct: 310 ASLSNSSGGSSPRAENIKTSEGPRMCTD 337