Jatropha Genome Database

JcCB0072841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0072841.10 + phase: 0 
         (119 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29790.m000842 conserved hypothetical protein                          141   8e-35
30138.m003914 conserved hypothetical protein                           87   2e-18
29813.m001534 conserved hypothetical protein                           47   2e-06

>29790.m000842 conserved hypothetical protein
          Length = 502

 Score =  141 bits (355), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 74/99 (74%), Gaps = 1/99 (1%)

Query: 1  MLKTENSVKEWEXXXXXXXXXXXXXXXNSMVS-RSPMKLWILRAITTALLWTCVVQLMAL 59
          M K ENSVKEWE               NSMVS RSPMKLWILRAITTALLWTCVVQLMAL
Sbjct: 1  MCKQENSVKEWEMKVKLLGDGKVEKLKNSMVSSRSPMKLWILRAITTALLWTCVVQLMAL 60

Query: 60 GEMWGPRLLKGWPSCFSQSDVHLSSIPPKVVLPPKSKFK 98
          GE+WGPRLLKGWPSCFS  DV L S+P KVVLPPK  +K
Sbjct: 61 GELWGPRLLKGWPSCFSHPDVELHSVPAKVVLPPKRVYK 99


>30138.m003914 conserved hypothetical protein
          Length = 510

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/67 (56%), Positives = 51/67 (76%), Gaps = 5/67 (7%)

Query: 36  MKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQ----SDVHLSSIPPKVVL 91
           MK+W++RA T+ LLWTC+VQL  +GEMWGPR+LKGWPSCFS     S +  +++P + VL
Sbjct: 39  MKMWMIRATTSVLLWTCIVQLTTIGEMWGPRVLKGWPSCFSHESAASALEENNLPVR-VL 97

Query: 92  PPKSKFK 98
           PPK  +K
Sbjct: 98  PPKRVYK 104


>29813.m001534 conserved hypothetical protein
          Length = 520

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 34/50 (68%)

Query: 28 NSMVSRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQ 77
          + +++R+ +++W +R  ++ LLWT +VQL+A+GE+W P  +  +    SQ
Sbjct: 18 SQVIARTRLQVWFIRVCSSILLWTGLVQLVAVGELWRPNFISTFTHKISQ 67