Jatropha Genome Database

JcCB0071481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071481.10 + phase: 1 /partial
         (144 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29598.m000468 Light-inducible protein CPRF-2, putative                163   3e-41
29883.m001986 DNA binding protein, putative                            61   2e-10

>29598.m000468 Light-inducible protein CPRF-2, putative
          Length = 453

 Score =  163 bits (412), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 104/127 (81%), Gaps = 6/127 (4%)

Query: 23  DSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQASNTSQSGSHVP-KGAGN 81
           DS++YQAFLKS+L+LACAAVA SRA FLK +DS ARADSG QASNTSQ GSH P KGAG+
Sbjct: 128 DSEDYQAFLKSKLNLACAAVAQSRASFLKPEDSSARADSGLQASNTSQLGSHAPSKGAGH 187

Query: 82  DLSRPQDTDANGLVGIHS--STQKKSGVPMKSTTSGSSREQSEDDENEGETEM--NMKDP 137
           D+ R Q+ D +G VGI S  ST KKS VP+K TTSGSSREQS+DDENEGETE+  NM DP
Sbjct: 188 DVFRSQEVDVDGSVGIPSLPSTHKKSVVPLKPTTSGSSREQSDDDENEGETELTENM-DP 246

Query: 138 ADAKRVR 144
            DAKRVR
Sbjct: 247 TDAKRVR 253


>29883.m001986 DNA binding protein, putative
          Length = 441

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 76/135 (56%), Gaps = 16/135 (11%)

Query: 21  PVDSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQA--------SNTSQSG 72
           P D+  Y AFLKSQL LACAA A +     KS+DS  + +  S +        +   +SG
Sbjct: 92  PEDTDGYHAFLKSQLDLACAAAAAA-----KSRDSSVKPEGVSSSFAEDQRVINKNCESG 146

Query: 73  SHVPKGAGNDLSRPQDTDANGLVGIHS--STQKKSGVPMKSTTSGSSREQSEDDENEGET 130
           S    G G+ +++ Q+    G + + +  S  +K  VP++  TSGSSRE S+DDE EG+T
Sbjct: 147 SSPVSGNGHGITKGQNEADGGSLRLPALPSMPRKQEVPVRQATSGSSREDSDDDELEGDT 206

Query: 131 EMN-MKDPADAKRVR 144
           E N   DPAD KR R
Sbjct: 207 ETNDNMDPADEKRAR 221