Jatropha Genome Database

JcCB0071361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071361.20 - phase: 2 /partial
         (169 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29917.m002027 conserved hypothetical protein                          173   3e-44

>29917.m002027 conserved hypothetical protein
          Length = 249

 Score =  173 bits (439), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/156 (64%), Positives = 112/156 (71%), Gaps = 4/156 (2%)

Query: 1   SKLICKLTGDTVNKSEEHIWKHINGKRFLNKLEQKETEKVEGKQQEEEAKSSMDXXXXXX 60
           SKLICKLTGDTVNKSEEHIWKHINGKRFLNKLEQKE  KVE KQ+ E++KSS D      
Sbjct: 79  SKLICKLTGDTVNKSEEHIWKHINGKRFLNKLEQKEMGKVEDKQK-EDSKSSADGPKKKK 137

Query: 61  XXXXXXXXXXXPVDEIISEVRNFSDKDSDSEEVDFWIPPAGEPWDFDDGGDRWXXX---X 117
                      P++EIISEVR+ SDKDSD+EE+DFW+PP GE WDFDDGGDRW       
Sbjct: 138 KKTKKKEKEEKPIEEIISEVRDSSDKDSDTEELDFWMPPVGERWDFDDGGDRWGSDGELE 197

Query: 118 XXXXXXXXXXXAVEDNGKESEELSKCTKRMSIEIGP 153
                      AV++NGKESEELSK TKRMSIEIGP
Sbjct: 198 QETEKENGADDAVDENGKESEELSKRTKRMSIEIGP 233