Jatropha Genome Database

JcCB0070971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070971.10 + phase: 0 /partial
         (370 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29584.m000243 conserved hypothetical protein                          357   5e-99

>29584.m000243 conserved hypothetical protein
          Length = 578

 Score =  357 bits (916), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 207/376 (55%), Positives = 243/376 (64%), Gaps = 33/376 (8%)

Query: 1   GDEIPEAMLPEPFNRSKQPAVESNTLETXXXXXXXXXXXXPVET--GT-LEKHQPAAVAS 57
           GDEIP+ +LPEPFNRSK        L+              +ET  GT + K Q    AS
Sbjct: 230 GDEIPKELLPEPFNRSK--------LDLSSGTTKPSTSLSIIETPAGTQMAKSQLPVAAS 281

Query: 58  HLSQSFKKRFSQKVAKSESENACIYSPMTCSRQSISPVLEETSLSEPSLITVSSE---LT 114
           H S+SF +RFSQK+  +E E  C   P  CS+QS+       S+ EP L  VSS     +
Sbjct: 282 HFSKSFTRRFSQKLTNTEVEITCQGYPTVCSQQSV------FSVPEPFLDIVSSNEETSS 335

Query: 115 DGNKDSTFCNSSIGEPMACLLATPCKDMDSINCRDSSAEEIASFQSTPAKLASTPAALKS 174
               DS  C++ +         TP K +DS +    S  ++ASFQSTPAKLA TPA L S
Sbjct: 336 SAPTDSNNCSADVTR-------TPSKKIDSTS-DGGSPTKVASFQSTPAKLALTPAKLMS 387

Query: 175 ATPALRPPKRCYMSPDEDSSSLADKLVRRPPRARSLNFETPVKNVKNELNGMENVSADNH 234
           ATPAL PPKRCYMSPD+DS+SLA+KLVRRP R RSL FE+P+KNV++EL     +     
Sbjct: 388 ATPALHPPKRCYMSPDDDSTSLANKLVRRPVRTRSLKFESPLKNVEDEL-----IDDSGD 442

Query: 235 XXXXXXXXILNILPESLLQSIREKERKVQEERDPAISLAKRRRQMVACLPKLFNVIHFLF 294
                   IL ILPESLLQSIREKERK QEERDPAIS AKRRRQM+ACLPKLFN++HF F
Sbjct: 443 ASGDDDGDILKILPESLLQSIREKERKAQEERDPAISQAKRRRQMIACLPKLFNLMHFFF 502

Query: 295 QSINRSVITKEELIHKIIAGHSDIVDRRXXXXXXXXXXXXXXXWISEKSASSGDLLFCIN 354
           QSINRSV+TKEEL+HKIIAGHSDIVDRR               WIS+K A+SGD LFCIN
Sbjct: 503 QSINRSVLTKEELMHKIIAGHSDIVDRREVEEQLDLLLELVPEWISKKLATSGDSLFCIN 562

Query: 355 KMSSAENIRSRLEEAK 370
           KMSS E IR+RLEEAK
Sbjct: 563 KMSSPETIRARLEEAK 578