Jatropha Genome Database

JcCB0070851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070851.10 - phase: 0 /partial
         (128 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008758 protein binding protein, putative                       184   1e-47

>30128.m008758 protein binding protein, putative
          Length = 276

 Score =  184 bits (467), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 96/111 (86%), Gaps = 1/111 (0%)

Query: 19  NPCPICLGPFIQESYLDSCFHKFCYNCILRWTKVVAGK-HSRAPSSVKCPLCKTENLSII 77
           NPCPICLGPFIQESYLD+CFHKFCYNCIL WTKV+  K HS +PSSVKCPLCKTEN SII
Sbjct: 22  NPCPICLGPFIQESYLDTCFHKFCYNCILHWTKVIGRKRHSPSPSSVKCPLCKTENHSII 81

Query: 78  YGYDGSSFQRHCINETHEHSSFFSKAHKYRLRCYYTEPGTLSNIVNVSRYW 128
           YG+DGSSFQRH  N   ++SSFFSK HKYRL+CYYT+ G+LS IVNV RYW
Sbjct: 82  YGFDGSSFQRHYTNVICQNSSFFSKEHKYRLQCYYTKSGSLSKIVNVLRYW 132