Jatropha Genome Database

JcCB0069321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0069321.10 + phase: 2 /pseudo/partial
         (496 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29585.m000579 methionine-tRNA synthetase, putative                    613   e-176
30204.m001734 methionine-tRNA synthetase, putative                    147   1e-35
29904.m002904 methionine-tRNA synthetase, putative                     82   4e-16
27451.m000252 valyl-tRNA synthetase, putative                          49   7e-06

>29585.m000579 methionine-tRNA synthetase, putative
          Length = 523

 Score =  613 bits (1580), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 299/349 (85%), Positives = 314/349 (89%), Gaps = 7/349 (2%)

Query: 1   RSRTNT-HVQTRISFPPNLFLSSSKSRKAAFCTYSISNDNR------KNDEAGTAETFVL 53
           +SRT T H++ R++F  NL  SSS SRKA FCT +ISN N       +N EA  AETFVL
Sbjct: 24  KSRTTTTHLKNRLNFSKNLIFSSSASRKAQFCTCTISNSNSNIHNSAQNGEAVAAETFVL 83

Query: 54  TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFVTGTDEHGEKIXXXXXXXXXSP 113
           TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFVTGTDEHGEKI         SP
Sbjct: 84  TTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFVTGTDEHGEKIAAAAAACGSSP 143

Query: 114 SEHCDVISQAYKTLWKDLEIAYDKFIRTTDPKHEAIVKEFYSRVLANGDIYRADYEGLYC 173
           SEHCDVISQ Y+TLWKDLEI+YDKFIRTTDPKHEAIVKEFYSRVLANGDIYRADYEGLYC
Sbjct: 144 SEHCDVISQDYRTLWKDLEISYDKFIRTTDPKHEAIVKEFYSRVLANGDIYRADYEGLYC 203

Query: 174 VNCEEYKDEKDLLDNKCCPVHLKPCIQRKEDNYFFALSKYQKLLEETLTECPNFVQPSFR 233
           VNCEEYKD K+LLDN CCP+HLKPCI+RKEDNYFFALSKYQKLLEETLTE PNFVQPSFR
Sbjct: 204 VNCEEYKDAKELLDNNCCPMHLKPCIERKEDNYFFALSKYQKLLEETLTENPNFVQPSFR 263

Query: 234 LNEVQSWIRSGLKDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDNKQPNLQ 293
           LNEVQSWI+SGLKDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSED +QPNLQ
Sbjct: 264 LNEVQSWIKSGLKDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDKEQPNLQ 323

Query: 294 SAVSSGWPASLHLIGKDILRFHAVYWPAMLMSAGLGLPKMVFGHGFLTK 342
           +AVSSGWPASLHLIGKDILRFHAVYWPAMLMSAGLGLPKMVFGHGFLTK
Sbjct: 324 NAVSSGWPASLHLIGKDILRFHAVYWPAMLMSAGLGLPKMVFGHGFLTK 372



 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 46/67 (68%)

Query: 421 LVVDAAIAAEGNAFKDNVEKLVEKARIHYENLSLSLACEAVLEIGNAGNGYMDERTPWSL 480
           +++ A +      F       V+KA+IHYENL+LS+ACEAVLEIGNAGN YMDER PWSL
Sbjct: 352 MLMSAGLGLPKMVFGHGFLTKVDKAQIHYENLALSVACEAVLEIGNAGNAYMDERAPWSL 411

Query: 481 FXERGVG 487
           F + G  
Sbjct: 412 FKQGGAA 418


>30204.m001734 methionine-tRNA synthetase, putative
          Length = 617

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 212/492 (43%), Gaps = 74/492 (15%)

Query: 52  VLTTPLYYVNAPPHMGSAYTTIAADAIARFQRLLGKKVIFVTGTDEHGEKIXXXXXXXXX 111
           ++T+ L YVN  PH+G     +  D  AR+ RL G  V+++ GTDE+G            
Sbjct: 30  LITSALPYVNNVPHLG----VLNGDVFARYCRLRGHNVLYICGTDEYGTATETKAMEENC 85

Query: 112 SPSEHCDVISQAYKTLWKDLEIAYDKFIRTTDPKHEAIVKEFYSRVLANGDIYRADYEGL 171
           +P E CD     +K ++   +I++D+F RT+ P+   I +  + +++ N  +     + L
Sbjct: 86  TPQEICDKYHAIHKEVYDWFDISFDEFGRTSTPQQTEICQAIFKKLMENNWLSENIMQQL 145

Query: 172 YCVNCEEYKDEK-------------------------------DLLDNKCCPVHLKPCIQ 200
           YC  CE +  ++                               +L++ +C      P   
Sbjct: 146 YCDTCERFLADRFVEGTCPTLGCDYDSARGDQCEKCGKFLNPTELINPRCKVCQTTP-RT 204

Query: 201 RKEDNYFFALSKYQKLLEETLTECPNFVQPSFRLNEVQS---WIRSGLKDFSISRASVDW 257
           R  +N F  L   +  L+  ++E    V  S+  N +Q+   W+R GLK   I+R  + W
Sbjct: 205 RDTNNLFLELPLLKDNLQSYISEMS--VTGSWSQNAIQTTHAWLRDGLKPRCITR-DLKW 261

Query: 258 GIPVPNDN--KQTIYVWFDALLGYISALSEDNKQPNLQSAVSSGW------PASLHL--- 306
           G+PVP +    +  YVWFDA +GYIS          + S  +  W      P ++ L   
Sbjct: 262 GVPVPLEKFKDKVFYVWFDAPIGYIS----------ITSCYTPDWEKWWKNPENVELYQF 311

Query: 307 IGKDILRFHAVYWPAMLMSA--GLGLPKMVFGHGFLTKDGLKMGKSLGNTLEPNELIEKF 364
           +GKD + FH V +P+ L+       L K +    +L  +  K  KS G  +  N+  +  
Sbjct: 312 MGKDNVPFHTVMFPSTLIGTRENWTLMKNISVTEYLNYESGKFSKSKGVGVFGNDARDAH 371

Query: 365 GPDAV-RYFFLREVEFGSDGDYSEERFVNIVNAHLANTIGNLLNRTLGLLKKNC---QST 420
            P  V RY+ L      SD  ++ E F   +N  L + +GN ++R L  +         T
Sbjct: 372 HPAEVWRYYLLANRPEISDTIFTWEDFQAKLNNELIHNLGNFIHRVLSFIANTSGKGYGT 431

Query: 421 LVVDAAIAAEGNA----FKDNVEKLVEKARIHYENLSLSLACEAVLEIGNAGNGYMDERT 476
           ++ DA   AE +     F  +V  LV++     + + L    +  + I  AGN Y+    
Sbjct: 432 VIPDAP-GAESHPLTIKFAIDVTNLVDEYVKAMDQVKLKQGLKCAMSISGAGNTYLQASQ 490

Query: 477 PWSLFXERGVGC 488
            + L+ E    C
Sbjct: 491 YFRLYEEDQASC 502


>29904.m002904 methionine-tRNA synthetase, putative
          Length = 678

 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 9/166 (5%)

Query: 36  SNDNRKNDEAGTA------ETFVLTTPLYYVNAPPHMGSAY-TTIAADAIARFQRLLGKK 88
           S ++ KND+             ++T+ L YVN  PH+G+     ++AD  AR+ RL G  
Sbjct: 6   SENSSKNDQTAKKVPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYN 65

Query: 89  VIFVTGTDEHGEKIXXXXXXXXXSPSEHCDVISQAYKTLWKDLEIAYDKFIRTTDPKHEA 148
            I++ GTDE+G            SP E CD     ++ ++K   I++D+F RT+ P+   
Sbjct: 66  AIYICGTDEYGTATETKAMEENCSPKEICDKYHAIHREVYKWFNISFDEFGRTSTPQQTE 125

Query: 149 IVKEFYSRVLANGDIYRADYEGLYCVNCEEYKDEKDLLDNKCCPVH 194
           + +  + ++L N  +     + LYC  C+ +    D L    CP  
Sbjct: 126 VCQAIFKKLLENNWLSENTMQQLYCDTCKRFL--ADRLVEGTCPTE 169


>27451.m000252 valyl-tRNA synthetase, putative
          Length = 694

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 22/140 (15%)

Query: 271 VWFDALLGYISALSEDNKQPNLQSAVSSGWPASLHLIGKDILRFHAVYWPAMLMSAGLGL 330
           +W  + LG+  A SED K+          +P ++   G DIL F    W A ++  G+  
Sbjct: 526 LWPFSTLGWPDASSEDFKK---------FYPTTMLETGHDILFF----WVARMVMMGIEF 572

Query: 331 PKMV-----FGHGFLT-KDGLKMGKSLGNTLEPNELIEKFGPDAVRYFFLREVEFGSDGD 384
              V     + HG +    G KM K+LGN ++P + I+ FG DA+R F L     G D +
Sbjct: 573 TGTVPFSNVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKDFGTDALR-FTLALGTAGQDLN 631

Query: 385 YSEERFVNIVNAHLANTIGN 404
            S ER     N    N + N
Sbjct: 632 LSTERLT--ANKAFTNKLWN 649