Jatropha Genome Database

JcCB0065971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065971.10 + phase: 0 
         (162 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008673 cu/zn superoxide dismutase, putative                    204   2e-53
29950.m001121 superoxide dismutase [cu-zn], putative                  203   3e-53
29589.m001265 superoxide dismutase [cu-zn], putative                  183   3e-47
30190.m011071 superoxide dismutase copper chaperone, putative          60   3e-10

>30128.m008673 cu/zn superoxide dismutase, putative
          Length = 152

 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 115/139 (82%), Gaps = 1/139 (0%)

Query: 21  VRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHGAP 80
           V+G+I F Q  +GPT VTG ++GL PGLHGFH+HA GDTTNGC STGPH+NP  K+HGAP
Sbjct: 14  VKGTIFFTQEADGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAP 73

Query: 81  TDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAGGHEL 140
            D+ RHAGDLGN+ VG DG A  ++ D QIPLSGP+SI+GRAVVVHADPDDLGK GGHEL
Sbjct: 74  GDENRHAGDLGNVTVGDDGTATFTIVDTQIPLSGPNSIIGRAVVVHADPDDLGK-GGHEL 132

Query: 141 SKTTGNAGARVGCGIIGLH 159
           SK+TGNAG R+ CGIIGL 
Sbjct: 133 SKSTGNAGGRIACGIIGLQ 151


>29950.m001121 superoxide dismutase [cu-zn], putative
          Length = 145

 Score =  203 bits (516), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 110/118 (93%)

Query: 17  GEPNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKD 76
           G+P+V+GS+ F+Q+ +GPT+VTGRI+GLSPGLHGFHIHA GDTTNGCNSTGPH+NP K++
Sbjct: 15  GDPHVKGSLQFIQQTHGPTYVTGRISGLSPGLHGFHIHALGDTTNGCNSTGPHYNPLKRN 74

Query: 77  HGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGK 134
           HGAP  +ERHAGDLGNIV G DGIAE+S+KDMQIPL+GPHSILGRAVVVHADPDDLGK
Sbjct: 75  HGAPFHEERHAGDLGNIVTGSDGIAEISIKDMQIPLTGPHSILGRAVVVHADPDDLGK 132


>29589.m001265 superoxide dismutase [cu-zn], putative
          Length = 213

 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 90/142 (63%), Positives = 107/142 (75%), Gaps = 1/142 (0%)

Query: 17  GEPNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKD 76
           G  NV G +   Q  +GPT V  RITGL+PGLHGFH+H +GDTTNGC STG HFNP    
Sbjct: 70  GNSNVEGVVTLTQGDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCMSTGAHFNPKGLT 129

Query: 77  HGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAG 136
           HG+P D  RHAGDLGNIV   DG+AE ++ D QIPLSGP++++GRA+VVH   DDLGK G
Sbjct: 130 HGSPEDDIRHAGDLGNIVANADGVAEATIVDSQIPLSGPNAVIGRALVVHELEDDLGK-G 188

Query: 137 GHELSKTTGNAGARVGCGIIGL 158
           GHELS TTGNAG R+ CG++GL
Sbjct: 189 GHELSLTTGNAGGRLACGVVGL 210


>30190.m011071 superoxide dismutase copper chaperone, putative
          Length = 330

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 8/112 (7%)

Query: 19  PNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHG 78
           P++ G + F Q       +    +GLSPG HG+ I+ FGD T G  STG  +NP   + G
Sbjct: 182 PDIFGVVRFAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVYNP--SNQG 239

Query: 79  APTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPD 130
             T+KE   GDLG + V  +G A  S    ++ +     ++GR+VVV+   D
Sbjct: 240 --TEKEPQ-GDLGTLEVDENGEAFFSGSKQKLRVV---DLIGRSVVVYGTED 285