Jatropha Genome Database

JcCB0065721.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065721.30 - phase: 1 /partial
         (109 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001348 pentatricopeptide repeat-containing protein, putative   129   3e-31
29496.m000143 pentatricopeptide repeat-containing protein, putative    53   3e-08
29698.m000065 pentatricopeptide repeat-containing protein, putative    51   1e-07
30063.m001431 pentatricopeptide repeat-containing protein, putative    50   2e-07
30073.m002218 pentatricopeptide repeat-containing protein, putative    50   2e-07
29767.m000203 pentatricopeptide repeat-containing protein, putative    49   7e-07
30147.m014417 pentatricopeptide repeat-containing protein, putative    48   8e-07
28859.m000329 pentatricopeptide repeat-containing protein, putative    48   1e-06
29917.m001989 pentatricopeptide repeat-containing protein, putative    48   1e-06
30147.m014056 pentatricopeptide repeat-containing protein, putative    48   1e-06
29872.m000549 pentatricopeptide repeat-containing protein, putative    48   1e-06
29801.m003071 pentatricopeptide repeat-containing protein, putative    47   1e-06
29736.m002066 pentatricopeptide repeat-containing protein, putative    47   1e-06
29848.m004530 pentatricopeptide repeat-containing protein, putative    47   2e-06
30147.m014124 pentatricopeptide repeat-containing protein, putative    47   2e-06
30128.m008660 pentatricopeptide repeat-containing protein, putative    47   3e-06
29889.m003339 pentatricopeptide repeat-containing protein, putative    46   3e-06
30055.m001579 pentatricopeptide repeat-containing protein, putative    46   4e-06
29629.m001406 pentatricopeptide repeat-containing protein, putative    46   4e-06
28196.m000206 pentatricopeptide repeat-containing protein, putative    46   5e-06
29852.m001986 pentatricopeptide repeat-containing protein, putative    45   6e-06
29915.m000471 pentatricopeptide repeat-containing protein, putative    45   7e-06
27965.m000110 pentatricopeptide repeat-containing protein, putative    45   7e-06

>29780.m001348 pentatricopeptide repeat-containing protein, putative
          Length = 449

 Score =  129 bits (324), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/95 (66%), Positives = 73/95 (76%), Gaps = 7/95 (7%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           + GR RDAMRLV KMKV GCEPNVWIYN LLDM GRV +LRQVEKLWKEMKRRK+APDKV
Sbjct: 292 KTGRTRDAMRLVAKMKVKGCEPNVWIYNSLLDMHGRVKNLRQVEKLWKEMKRRKVAPDKV 351

Query: 66  TCTGVISAYNKL----TCLLSSSYYSQHKVKGSLL 96
           T T VI+AYNK     TC+    YY +++  G ++
Sbjct: 352 TYTSVIAAYNKAKEFETCV---RYYHEYRFNGGVI 383


>29496.m000143 pentatricopeptide repeat-containing protein, putative
          Length = 625

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           R   +  A+RL  +M+  G  P V  YN +L     +  +R   KL  EM  +KI PD V
Sbjct: 315 RLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNV 374

Query: 66  TCTGVISAYNKL 77
           TC  +I+AY K+
Sbjct: 375 TCNTLINAYCKI 386


>29698.m000065 pentatricopeptide repeat-containing protein, putative
          Length = 835

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           L  + +K    + M+++  MK+NGC PN   +N +L M G+    + V ++++EMK    
Sbjct: 440 LGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGF 499

Query: 61  APDKVTCTGVISAYNK 76
            PD+ T   +ISAY +
Sbjct: 500 EPDRDTFNTLISAYGR 515


>30063.m001431 pentatricopeptide repeat-containing protein, putative
          Length = 634

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           + ++    ++  A +L  +MK NG  P+V+ Y  LLD   +V  + Q    + EM++   
Sbjct: 129 IGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGC 188

Query: 61  APDKVTCTGVISAYNK 76
           AP+ VT T +I AY K
Sbjct: 189 APNVVTYTALIHAYLK 204


>30073.m002218 pentatricopeptide repeat-containing protein, putative
          Length = 1429

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 43/71 (60%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           R+  + +A+++   M+ + C+P++W YN ++ + GR     + E+L+KE++ +   PD V
Sbjct: 294 RESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAV 353

Query: 66  TCTGVISAYNK 76
           T   ++ A+ +
Sbjct: 354 TYNSLLYAFAR 364


>29767.m000203 pentatricopeptide repeat-containing protein, putative
          Length = 753

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 9   RIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTCT 68
           R+  AMR    MK  G  P+V  YN +++   R   + + EKL+ EMK + IAP  ++ T
Sbjct: 262 RLETAMRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTVISYT 321

Query: 69  GVISAY 74
            +I  Y
Sbjct: 322 TMIKGY 327


>30147.m014417 pentatricopeptide repeat-containing protein, putative
          Length = 1151

 Score = 48.1 bits (113), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 42/70 (60%)

Query: 8   GRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTC 67
           G++ +A +LV  M  N   PN   Y  L++    V ++++ E+L+ EM++R + P+ +T 
Sbjct: 805 GKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTY 864

Query: 68  TGVISAYNKL 77
           T ++  YN++
Sbjct: 865 TSLLHGYNRI 874


>28859.m000329 pentatricopeptide repeat-containing protein, putative
          Length = 517

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 41/72 (56%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           RKG +  A++L   M+  G E NV  +N L+D   +   L +  K++ EMK   +AP+ +
Sbjct: 263 RKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTI 322

Query: 66  TCTGVISAYNKL 77
           T   +I+ ++++
Sbjct: 323 TYNTLINGHSQM 334


>29917.m001989 pentatricopeptide repeat-containing protein, putative
          Length = 623

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 11/106 (10%)

Query: 4   MVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPD 63
           + ++G++R+A +L  +M   G  P++  +N L+    +   +R+   L  EM    I PD
Sbjct: 329 LCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPD 388

Query: 64  KVTCTGVISAYNKLTCLLSSSYYSQHKVKGSLLLLVPVYIFNLPSS 109
           KVTC  +I  Y K           + ++  +L L+V +  F +P S
Sbjct: 389 KVTCQVLIEGYRK-----------EARIVSALNLVVELERFGVPIS 423


>30147.m014056 pentatricopeptide repeat-containing protein, putative
          Length = 876

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 15  RLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTCTGVISAY 74
           +L+ +M  +GC+PNV  YN L+   GR N L     ++ EM+R    PD+VT   +I  +
Sbjct: 401 KLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIH 460

Query: 75  NK 76
            K
Sbjct: 461 AK 462


>29872.m000549 pentatricopeptide repeat-containing protein, putative
          Length = 642

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           + GR+ DA R+   M  +GC+P+V + N L+++ G+V  L    KL+++M+  +  P+ V
Sbjct: 316 KAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQCKPNVV 375

Query: 66  TCTGVISAYNKLTCLLSSSYYSQHKVKG 93
           T   VI A  +     S +     K+KG
Sbjct: 376 TYNTVIKALFECKAPASEAASWFEKMKG 403


>29801.m003071 pentatricopeptide repeat-containing protein, putative
          Length = 827

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 42/70 (60%)

Query: 7   KGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVT 66
           +GR  + M++  ++++  C P++  +N LL + G+     +V  ++KEMKR    P++ T
Sbjct: 441 RGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDT 500

Query: 67  CTGVISAYNK 76
              +ISAY++
Sbjct: 501 FNTLISAYSR 510



 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 40/71 (56%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           + G    AMR+  +M+  GC+PN+  +N L+ M G      ++ K+++E++    APD V
Sbjct: 405 KAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIV 464

Query: 66  TCTGVISAYNK 76
           T   +++ + +
Sbjct: 465 TWNTLLAVFGQ 475


>29736.m002066 pentatricopeptide repeat-containing protein, putative
          Length = 604

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query: 4   MVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPD 63
           + R G+IR+A  L+ +M+  GC P+V  Y  ++D    V  L++V +L KEM+ + + P+
Sbjct: 120 LFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPN 179

Query: 64  KVTCTGVI 71
             T + +I
Sbjct: 180 LYTYSSII 187


>29848.m004530 pentatricopeptide repeat-containing protein, putative
          Length = 1113

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           L  +++ GR+ +A  L  +M   GC PN  IYN L++  G+   +    +L+K M R  I
Sbjct: 902 LDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGI 961

Query: 61  APDKVTCTGVIS 72
            PD  + T ++ 
Sbjct: 962 RPDLKSYTSLVG 973



 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%)

Query: 8   GRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTC 67
           G++ DAM L  KMK +  +P+   Y  +LD       L +V++ W EM+    APD +T 
Sbjct: 313 GKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITF 372

Query: 68  TGVISA 73
           T +++A
Sbjct: 373 TILVNA 378


>30147.m014124 pentatricopeptide repeat-containing protein, putative
          Length = 735

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           RKG++++A+ +  +M    CEP+++ YN ++++        Q  K++  MK   IAPD  
Sbjct: 88  RKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVC 147

Query: 66  TCTGVISAY 74
           T T  I ++
Sbjct: 148 TFTIRIKSF 156


>30128.m008660 pentatricopeptide repeat-containing protein, putative
          Length = 532

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 4   MVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRK-IAP 62
           + R G +     L   M+  GC P+V  YN L+    + N L +   L KE++ R   +P
Sbjct: 208 LCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSP 267

Query: 63  DKVTCTGVISAYNKLTCLLSSSYYSQHKVKGSL 95
           D +T T +IS + KL  L ++S   +  ++  +
Sbjct: 268 DVMTYTSIISGFRKLGKLEAASVLFEEMIRSGI 300


>29889.m003339 pentatricopeptide repeat-containing protein, putative
          Length = 665

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           L  M+ + R +    + + MK +G EPNV+ YN LL    + N +    KL  EM  +  
Sbjct: 156 LDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGC 215

Query: 61  APDKVTCTGVISAYNKL 77
            PD V+ T VIS+ +KL
Sbjct: 216 EPDVVSYTTVISSMSKL 232


>30055.m001579 pentatricopeptide repeat-containing protein, putative
          Length = 528

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           R G I +A R+ T+MKV GC PNV+ Y  ++D   R   + +   ++ EM      P+ +
Sbjct: 258 RAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSI 317

Query: 66  TCTGVISAYNK 76
           T   ++  + K
Sbjct: 318 TFNNLLRVHVK 328


>29629.m001406 pentatricopeptide repeat-containing protein, putative
          Length = 1071

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 43/76 (56%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           L +  +KGR + A+ L+ +M   G E +   YN L+D   + N   +   L K+M++R I
Sbjct: 210 LNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMI 269

Query: 61  APDKVTCTGVISAYNK 76
           +P+++T   +I+ + K
Sbjct: 270 SPNEITYNSIINGFVK 285


>28196.m000206 pentatricopeptide repeat-containing protein, putative
          Length = 478

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 40/71 (56%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           + G IR+   ++++MK N C+P++  +N L+D  G+     ++E+++K +   K  P   
Sbjct: 254 KNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLP 313

Query: 66  TCTGVISAYNK 76
           T   +I+ Y K
Sbjct: 314 TFNSMITNYGK 324



 Score = 45.4 bits (106), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 13  AMRLVTKMK-VNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKVTCTGVI 71
           A+    KMK +  C+PNV  YN LL    +  ++ QV  L+K++ +  ++PD  T  GV+
Sbjct: 190 ALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVM 249

Query: 72  SAYNK 76
            AY K
Sbjct: 250 DAYGK 254


>29852.m001986 pentatricopeptide repeat-containing protein, putative
          Length = 809

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 39/74 (52%)

Query: 1   LQFMVRKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKI 60
           L  M  K  + D   L ++MK    +P+V  Y  L+D   + N+++    L+ EM  R +
Sbjct: 692 LDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGL 751

Query: 61  APDKVTCTGVISAY 74
           APD VT T ++S Y
Sbjct: 752 APDTVTYTALLSGY 765


>29915.m000471 pentatricopeptide repeat-containing protein, putative
          Length = 271

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 40/72 (55%)

Query: 6   RKGRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNSLRQVEKLWKEMKRRKIAPDKV 65
           +KG+++ A  ++  M   GC+PNV  YN LL     +  + +  ++ +++K+  I PD  
Sbjct: 169 KKGKLQKAYEVIDVMNTIGCQPNVQTYNCLLKGLCYIGKVEEAYEILEDIKKSSIEPDIY 228

Query: 66  TCTGVISAYNKL 77
           T T ++  + K+
Sbjct: 229 TYTAMMDGFCKV 240


>27965.m000110 pentatricopeptide repeat-containing protein, putative
          Length = 647

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 8   GRIRDAMRLVTKMKVNGCEPNVWIYNFLLDMQGRVNS--LRQVEKLWKEMKRRKIAPDKV 65
           G + + + +  +MK NG EP+++ YNFL++  G VNS  +   E++++ M+  KI PD V
Sbjct: 193 GMVEEVLWVWRRMKENGIEPSLFSYNFLVN--GLVNSKFIESAERVFEVMENGKIGPDVV 250

Query: 66  TCTGVISAY 74
           T   +I  Y
Sbjct: 251 TYNTMIKGY 259