Jatropha Genome Database

JcCB0065721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065721.10 - phase: 0 
         (105 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001322 brg-1 associated factor, putative                       105   5e-24
29676.m001637 Upstream activation factor subunit UAF30, putative       83   2e-17

>29780.m001322 brg-1 associated factor, putative
          Length = 614

 Score =  105 bits (262), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 56/58 (96%)

Query: 1  MVSDSDLVTRLREVLQDSDLDTATAGSIRRKLEEEFGVNLSDRKAFIREQIDIYLETL 58
          MVSDSDLVTRLRE+LQDSDL+TATAGS+RRKLEE FGV+LSDRKAFIREQID YLETL
Sbjct: 1  MVSDSDLVTRLREILQDSDLNTATAGSVRRKLEEVFGVDLSDRKAFIREQIDSYLETL 58


>29676.m001637 Upstream activation factor subunit UAF30, putative
          Length = 322

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 52/57 (91%)

Query: 1  MVSDSDLVTRLREVLQDSDLDTATAGSIRRKLEEEFGVNLSDRKAFIREQIDIYLET 57
          MVSDS+L+ RLRE L++SDL+T T G +RR+LEE+FG++LSD+KAFIREQ+D++L++
Sbjct: 1  MVSDSELIERLREFLKNSDLNTTTTGIVRRQLEEDFGIDLSDKKAFIREQVDLFLQS 57