Jatropha Genome Database

JcCB0065691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065691.10 - phase: 0 
         (133 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006115 conserved hypothetical protein                          150   2e-37

>29908.m006115 conserved hypothetical protein
          Length = 111

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 77/89 (86%)

Query: 1  MAASSSRGGSFYGGAAPYRSKDGLSTRPAASSDEIQLRIDPMHADFDDEISGLRSQVKQL 60
          MAASSSR G FYGGA PYRS++GL+TRP  SSDEIQLRIDPMHADFDDEISGLR QVK L
Sbjct: 1  MAASSSRDGFFYGGAVPYRSREGLTTRPVGSSDEIQLRIDPMHADFDDEISGLRGQVKLL 60

Query: 61 RNVAQEIGSEAKFQKDFLDQLQMTVIKAQ 89
          RNVAQEIGSEAKFQKDFLDQL +  +  +
Sbjct: 61 RNVAQEIGSEAKFQKDFLDQLLLYFLTVE 89