Jatropha Genome Database

JcCB0064411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064411.20 - phase: 1 /pseudo/partial
         (199 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003567 calmodulin binding protein, putative                    239   5e-64
29706.m001340 conserved hypothetical protein                           64   5e-11

>29739.m003567 calmodulin binding protein, putative
          Length = 452

 Score =  239 bits (610), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 125/172 (72%), Positives = 131/172 (76%)

Query: 28  KSCADSLASKNSKSSEQSFVKVRKNNVSTRISAKPPIGQVTRXXXXXXXXXXXXXXXXXX 87
           KSCADSL  K+SKSSEQSFVKVRKNNV+TRISAKPPIG VTR                  
Sbjct: 280 KSCADSLVMKHSKSSEQSFVKVRKNNVTTRISAKPPIGHVTRSSSSPSSEFRCDESSASS 339

Query: 88  XXXXXXXXXXGNTGLASDRTEESGNSKPNYMNLTESTKAKRKTTNHLSHRIQRQSMDEFQ 147
                     GNTGLASDRTEESGNS+PNYMNLTESTKAKRK  NHLS+RIQRQSMDEFQ
Sbjct: 340 SICTSATPISGNTGLASDRTEESGNSRPNYMNLTESTKAKRKIYNHLSNRIQRQSMDEFQ 399

Query: 148 FLKRSAAFSNEDSKSSAGSDHPSINLSKPLCLPTRLDKNSMKQLRGTDNPLV 199
           FL+RSAAFSN DSKSSAGSD  S+NLSKPL LPTRLDKNSMKQ RG D PL 
Sbjct: 400 FLRRSAAFSNGDSKSSAGSDPSSVNLSKPLGLPTRLDKNSMKQFRGMDYPLY 451


>29706.m001340 conserved hypothetical protein
          Length = 429

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 74/156 (47%), Gaps = 9/156 (5%)

Query: 32  DSLASKNSKSSEQSFVKVRKNNVSTRISAKPP-IGQVTRXXXXXXXXXXXXXXXXXXXXX 90
           D++AS  S  S    V+VR+NNVST+I AKPP +  + R                     
Sbjct: 274 DNIASIYSYPSIHESVEVRRNNVSTKILAKPPTVSHIIRSSSAPNSESLCDESSESTSST 333

Query: 91  XXXXXXXGNTGLASDRTEESGNSKPNYMNLTESTKAKRKTTNHLSHRIQRQSMDEFQFLK 150
                   +  +  D+ E S   KP+YMNLTE+TKAK+K+  H + ++ R  M E QF  
Sbjct: 334 AVSPIPFSSHTILVDKVE-SNTRKPSYMNLTEATKAKQKSCRHSAAKMPRHLM-ENQFHT 391

Query: 151 RSAAFSNEDSKSSAGSDHPSINLSKPLCLPTRLDKN 186
            S   SN D  +      PS +LS+ L  P  L ++
Sbjct: 392 MSMPLSNGDGST------PSFSLSRDLYPPLPLGRH 421