Jatropha Genome Database

JcCB0064191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064191.20 + phase: 0 
         (185 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002001 conserved hypothetical protein                          102   1e-22

>29648.m002001 conserved hypothetical protein
          Length = 196

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 64/100 (64%), Gaps = 7/100 (7%)

Query: 93  WRFEQPTRVRPECVSPGCFP-SPLLKRKDSKRRT----VQLP--ESETDYTSDLETLARW 145
           WRF+QPTRV PECVSPGCFP SPLLKRK SKRRT    + +P  ESE DY SDLETLARW
Sbjct: 97  WRFDQPTRVGPECVSPGCFPSSPLLKRKGSKRRTSHVHIDIPGSESEGDYVSDLETLARW 156

Query: 146 SLSSRKXXXXXXXXXXXXXXXXXXXXXXXXEAEWAGFGLF 185
           SLSSRK                        +AEWAGFGLF
Sbjct: 157 SLSSRKSFSPFNDSSVSSYSSSQSSPRPVSDAEWAGFGLF 196



 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/23 (82%), Positives = 22/23 (95%)

Query: 1  MAVDDSFRKPGSVPFKWEIRPGV 23
          M +DDSF+KPG+VPFKWEIRPGV
Sbjct: 1  MTIDDSFKKPGAVPFKWEIRPGV 23