Jatropha Genome Database

JcCB0064191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064191.10 + phase: 1 /partial
         (205 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002000 replication factor C / DNA polymerase III gamma-ta...   275   8e-75
29648.m002014 replication factor C / DNA polymerase III gamma-ta...    59   1e-09
30190.m011152 replication factor C / DNA polymerase III gamma-ta...    49   2e-06

>29648.m002000 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 342

 Score =  275 bits (704), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 133/156 (85%), Positives = 148/156 (94%), Gaps = 1/156 (0%)

Query: 13  NY-GKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSSISQGDLRR 71
           NY  +IIEPLASRCAKFRFKPLSE+IMS R+L+IC+EEGLN+DAEALSTLS +SQGDLRR
Sbjct: 153 NYISRIIEPLASRCAKFRFKPLSEEIMSSRVLHICREEGLNLDAEALSTLSYVSQGDLRR 212

Query: 72  AITYLQGAARLFGSTISSKDLISVSGVIPKEFLGAFYAACKSGDFDLANKEVNNIIAEGY 131
           AITYLQGAARL+GSTISSKDLISVSGVIP+E +GA YAAC+SGDFD+ANKEVNNIIAEGY
Sbjct: 213 AITYLQGAARLYGSTISSKDLISVSGVIPQEAVGALYAACRSGDFDMANKEVNNIIAEGY 272

Query: 132 PVSQMLVQLFDLVVEADDISDEQKARICKSLAAADK 167
           PVSQMLVQL ++VVEADDISDEQKA+ICKSL AADK
Sbjct: 273 PVSQMLVQLLEVVVEADDISDEQKAQICKSLGAADK 308


>29648.m002014 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 360

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 42/66 (63%)

Query: 12  DNYGKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSSISQGDLRR 71
           ++  KII  L SRC +FRF PL    ++DR+ ++ + EGL++    L+ +  +S GD+R+
Sbjct: 175 NHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVPEPGLAAVVRLSNGDMRK 234

Query: 72  AITYLQ 77
           A+  LQ
Sbjct: 235 ALNILQ 240


>30190.m011152 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 333

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 1/145 (0%)

Query: 4   SAKFKESQDNYGKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSS 63
           S +F  + +   KIIEP+ SRCA  RF  LS+  +  R++ + + E +    E L  +  
Sbjct: 143 STRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQAEKVPYVPEGLEAIIF 202

Query: 64  ISQGDLRRAITYLQGAARLFGSTISSKDLISVSGVIPKEFLGAFYAACKSGDFDLANKEV 123
            + GD+R+A+  LQ     F   ++ +++  V        +         G +D A   +
Sbjct: 203 TADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVRHVMEGKYDDACSGL 261

Query: 124 NNIIAEGYPVSQMLVQLFDLVVEAD 148
             +   GY  + ++  LF ++   D
Sbjct: 262 KQLYDLGYSPTDIITTLFRIIKNYD 286