Jatropha Genome Database

JcCB0063711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0063711.10 - phase: 2 /partial
         (394 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001106 hypothetical protein                                    275   3e-74

>28320.m001106 hypothetical protein
          Length = 407

 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 130/147 (88%), Positives = 139/147 (94%), Gaps = 1/147 (0%)

Query: 249 EAEGAPNVVGLFKGSSDDTCSMNKYDCDLADLPAIILQQVASQVIRWLHEEALTVGIKAN 308
           E EGAPNVVGLFKGSSDD CS+NKYDCDLADLP IILQQVASQVIRWLHEEAL+VGIKAN
Sbjct: 261 EQEGAPNVVGLFKGSSDDVCSVNKYDCDLADLPVIILQQVASQVIRWLHEEALSVGIKAN 320

Query: 309 RDFLSLSFELDQGEVLSMVAHVDPEDVEGCISWWLVMEDGFA-EKKLHMDIADDASECRK 367
           RDFL LSFEL+QGEVLS+VAHVDPED EGCISWWLVMEDGFA E+KLHMDIAD+ASE RK
Sbjct: 321 RDFLCLSFELEQGEVLSLVAHVDPEDTEGCISWWLVMEDGFAEERKLHMDIADEASEYRK 380

Query: 368 FLGYLPLDVLYSTLMDLVTLCSGGGSH 394
           FLGYLPLD+LYS LM+LV+LCSGGGSH
Sbjct: 381 FLGYLPLDILYSILMNLVSLCSGGGSH 407